Locus 4548

Sequence ID X_DroMel_CAF1
Location 11,967,365 – 11,967,472
Length 107
Max. P 0.650892
window7479

overview

Window 9

Location 11,967,365 – 11,967,472
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 96.73
Mean single sequence MFE -35.86
Consensus MFE -34.70
Energy contribution -34.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 0.97
SVM decision value 0.24
SVM RNA-class probability 0.650892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11967365 107 - 22224390
UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUGCUCAGGAAAAGUCAGUGGAAG
.((((.(((.....)))(((..((((((....))))))..)))......))))..(((((((((..((.(......).))..))).))))))............... ( -34.70)
>DroSec_CAF1 6747 107 - 1
UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGUGGAAG
.......(((.(((((((((..((((((....))))))..)))......)))...(((((((((..((.(......).))..))).)))))).....))).)))... ( -36.90)
>DroSim_CAF1 6798 107 - 1
UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGUGGAAG
.......(((.(((((((((..((((((....))))))..)))......)))...(((((((((..((.(......).))..))).)))))).....))).)))... ( -36.90)
>DroEre_CAF1 6958 107 - 1
UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGAAGCAG
.((((.(((.....)))(((..((((((....))))))..)))......))))..(((((((((..((.(......).))..))).))))))....(.(....)).. ( -35.80)
>DroYak_CAF1 7049 106 - 1
UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGGACCA-
.(((((((..(((....(((..((((((....))))))..)))..))).)))...(((((((((..((.(......).))..))).))))))..........))))- ( -35.00)
>consensus
UUGGUGGCCAGCGAGGCGAUGGCACGUGUAUUUACGUGAAGUCAACGUAGCCAUACCUGAGAGAUUCGCCAGGACAGUCGUUUCUCCUCAGGAAAAGUCGGUGGAAG
.((((.(((.....)))(((..((((((....))))))..)))......))))..(((((((((..((.(......).))..))).))))))............... (-34.70 = -34.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:51 2006