Locus 4547

Sequence ID X_DroMel_CAF1
Location 11,966,678 – 11,966,777
Length 99
Max. P 0.558888
window7478

overview

Window 8

Location 11,966,678 – 11,966,777
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.86
Mean single sequence MFE -24.00
Consensus MFE -9.03
Energy contribution -10.51
Covariance contribution 1.48
Combinations/Pair 1.22
Mean z-score -1.90
Structure conservation index 0.38
SVM decision value 0.05
SVM RNA-class probability 0.558888
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11966678 99 - 22224390
----------UUUUCCC-UAAUCUGUCUUACAAAUUGUGUGUAA----------AGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUUCAAGCACAAUAUGCGAAAGUUUAGCAGCUGA
----------.......-((((.((..(((((.......)))))----------..)).))))..............((((((((((((...(((.....))))))))))..)))))... ( -19.70)
>DroSec_CAF1 6116 119 - 1
UUAUUUCAACUUUUGCC-UAAUCUGUCUUGCGAAUUGGGUAUAAGCAUAUUAAUAGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUCCAAGCACAAUAUGCAAAAGUUUAGCUGCUGA
.......((((((((((-((((.((.....)).)))))))....(((((((...((((((..............))))))((..........))..)))))))))))))).......... ( -23.74)
>DroSim_CAF1 6109 119 - 1
UUAUUUCAACUUUUGCC-UAAUCUGUCUUGCGAAUUGUGUGCAAGCAUAUUAAUAGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUCCAAGCACAAUAUGCAAAAGUUUAGCUGCUGA
.......(((((((((.-((...(((((((.(((..((.((((.(((((..(((((.............)))))))))))))))).))))))).))).)).))))))))).......... ( -26.82)
>DroEre_CAF1 6287 120 - 1
UCAAUUUCACUUUUGCCUUAGUCUGCCCCACAAAUUGUGUGUAAGCAUAUUAAUAGCAUAUUAAAGGAGCUAAUUUUGCUGUAAUUCUUGAAGCACAAUAUACACGAGCUGAGCUGCUUA
.............(((.(((((.(((..((((.....))))...))).)))))..))).....(((.((((...((((.((((....(((.....)))..))))))))...)))).))). ( -20.50)
>DroYak_CAF1 6377 120 - 1
UUAAUUUAACUUUUGCUUUAAUCUGCCUUACAAAUUGUGUGUAAACAUAUUAAUAGCAAAUUAAAGCACCUACUUAAGCUGCAACUUUUGAAGCACGAUAUGCUCGGAUUUUGCUGCUGA
.............(((((((((.(((.........(((((....)))))......))).)))))))))........(((.((((..(((((.(((.....))))))))..)))).))).. ( -29.26)
>consensus
UUAAUUCAACUUUUGCC_UAAUCUGUCUUACAAAUUGUGUGUAAGCAUAUUAAUAGCAUAUUAAAUCACCUAUUUAUGCUGCAACUUUUCAAGCACAAUAUGCAAAAGUUUAGCUGCUGA
.........(((((((.......((.....)).(((((((.............(((((((..............)))))))...........)))))))..)))))))............ ( -9.03 = -10.51 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:51 2006