Locus 4546

Sequence ID X_DroMel_CAF1
Location 11,961,964 – 11,962,076
Length 112
Max. P 0.536536
window7477

overview

Window 7

Location 11,961,964 – 11,962,076
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.75
Mean single sequence MFE -41.98
Consensus MFE -27.36
Energy contribution -28.00
Covariance contribution 0.64
Combinations/Pair 1.17
Mean z-score -1.73
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.536536
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11961964 112 + 22224390
AGUUGGCCCUGGAUGAGUUUG-UCUUGGCCUAGUGACAUGCGCA--CACUGGAUACGAUGGCUAAGAGCCGAAUGUGUUUGGCUUUUCGUGUCGU-GGCUAGGUGGCAAAA----AGCAA
....((((..((((......)-))).))))..((....(((.((--(.((((.(((((((.(.((((((((((....)))))))))).)))))))-).))))))))))...----.)).. ( -41.90)
>DroSec_CAF1 1284 113 + 1
AGUUGGCCCUGGAUGAGUUUG-UCUUGGCCUAGUGACAUGCGCACACACUGGAUACGAUGGCUAAGAGCCGAGUGUGUUUGGCUUCUCGUGUCGU-GGCUAGGUGGGC-AA----AGCAA
.(((.((((.((((......)-)))..(((((((.(((((((......(..((((((.((((.....))))..))))))..).....))))).))-.)))))))))))-..----))).. ( -40.20)
>DroSim_CAF1 1281 113 + 1
AGUUGGCCCUGGAUGAGUUUG-UCUUGGCCUAGUGACAUGCGCACACACUGCAUACGAUGGCUAAGAGCCGAGUGUGUUUGGCUUUUCGUGUCGU-GGCUAGGUGGGC-AA----AGCAA
.(((.((((.((((......)-)))..(((((((.(((((((.......)))))..((((.(.((((((((((....)))))))))).)))))))-.)))))))))))-..----))).. ( -40.10)
>DroEre_CAF1 1849 112 + 1
AGUUGGCCCUGGAUGAGUUUGUCUUUGGCCCAGUGACAUGCGCAGA--ACAGAUACGAUGGCCAAGAGCCGA-CGCUUCUGGCCUUUCGUGUCGU-GGCUCGGCGGGC-AA---GUGCAA
.(((((((..((((......))))..))))....))).(((((...--.(((((((((.(((((..(((...-.)))..)))))..))))))).)-)(((.....)))-..---))))). ( -47.00)
>DroYak_CAF1 1813 117 + 1
AGUUGGCCGUUGCUGAGUUUUGUCUUGGCCUAGUGACAUGCGCAGAGUAUAGAUACAAUGGCUAUGAGCCGA--GUGUUUGGCUUUUCGUGUCGUUGGCUACGUUGGC-AAAGCGGGCAU
..........((((..((((((((.(((((...(((((((...(((((.(((((((..((((.....)))).--)))))))))))).)))))))..)))))....)))-))))).)))). ( -40.70)
>consensus
AGUUGGCCCUGGAUGAGUUUG_UCUUGGCCUAGUGACAUGCGCACACACUGGAUACGAUGGCUAAGAGCCGA_UGUGUUUGGCUUUUCGUGUCGU_GGCUAGGUGGGC_AA____AGCAA
.....((((..............(((((((..(((.....)))........(((((((.(((((((.((.....)).)))))))..)))))))...))))))).))))............ (-27.36 = -28.00 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:49 2006