Locus 4542

Sequence ID X_DroMel_CAF1
Location 11,956,278 – 11,956,376
Length 98
Max. P 0.916554
window7470

overview

Window 0

Location 11,956,278 – 11,956,376
Length 98
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 76.16
Mean single sequence MFE -21.28
Consensus MFE -12.69
Energy contribution -12.81
Covariance contribution 0.13
Combinations/Pair 1.14
Mean z-score -2.08
Structure conservation index 0.60
SVM decision value 1.11
SVM RNA-class probability 0.916554
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11956278 98 + 22224390
AGCUUCUUUUU--UUCUGUUUUUUCUGUUUUUUUUUUUGUGUUACCCCAGGCUUAGACAAAGUGGCAUUUUGGGGCAUUAGCCUAAUGCCAACACAAAUC
...........--......................((((((((.......((((.....))))((((((...((((....)))))))))))))))))).. ( -21.50)
>DroSec_CAF1 44667 81 + 1
AGCCGCUUGCUGCUUCUGUUU---------UUUUUUUU---UUACCC-AG--CUAGACAAAGUGGCAUUU--GGGCAUUAGCCUAAUGC--ACACAAAUC
.(((((((.(((((...((..---------........---..))..-))--).))...)))))))((((--(.((((((...))))))--...))))). ( -20.50)
>DroSim_CAF1 23409 88 + 1
AGCCGCUUGCU--UUCUGUUUUA-------UUUUUUUU---UUACCCCAGGCUUAGACAAAGUGGCAUUUUGGGGCAUUAGUCUAAUGCCAACACAAAUC
.(((((((.((--.((((.....-------........---......))))...))...)))))))..((((.(((((((...)))))))....)))).. ( -21.51)
>DroEre_CAF1 24004 74 + 1
AGCCGCUUGCU--U---------------------UUU---UCGCCCCAGGCUUAGACAAAGUGGCAUUUGGGGGUAUUAGCCUAAUGCCAACGCAAAUC
.(((((((...--.---------------------(((---..(((...)))..)))..)))))))(((((.((((((((...)))))))..).))))). ( -21.60)
>consensus
AGCCGCUUGCU__UUCUGUUU_________UUUUUUUU___UUACCCCAGGCUUAGACAAAGUGGCAUUUUGGGGCAUUAGCCUAAUGCCAACACAAAUC
.(((((((...................................................))))))).......(((((((...))))))).......... (-12.69 = -12.81 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:43 2006