Locus 4541

Sequence ID X_DroMel_CAF1
Location 11,956,101 – 11,956,201
Length 100
Max. P 0.974373
window7469

overview

Window 9

Location 11,956,101 – 11,956,201
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.40
Mean single sequence MFE -20.76
Consensus MFE -17.84
Energy contribution -17.20
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -1.83
Structure conservation index 0.86
SVM decision value 1.73
SVM RNA-class probability 0.974373
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11956101 100 + 22224390
GUCAACAAAAUGCAUUCAAUUGGAUGCAUUUCCUCCGGUCAGCCGACUGCAAUUUGACCAAUUCACUUUUGGUUUUUAAUUAAAAAAUAUGUUUGCUUAC
((.((((((((((((((....))))))))))....(((((....))))).((((.((((((.......))))))...))))........)))).)).... ( -23.70)
>DroSec_CAF1 44490 100 + 1
GCCAACAAAACGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAUUUGACCAAUUCACUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAC
(((((......((((((....)))))).........(((((((.....))....))))).........)))))........................... ( -19.90)
>DroSim_CAF1 23232 100 + 1
GUCAACAAAAUGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAUUUGACCAAUUCACUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAC
((.((((((((((((((....))))))))))....(((((....)))))........((((.......)))).................)))).)).... ( -20.90)
>DroEre_CAF1 23827 100 + 1
GUCAACAAAACGCAUUCAACUGGAUGCAUUUCCUCCGGUCGGCCAGCUGCAAUUUGACCAAUUCGCUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAU
((.((((....((((((....)))))).............((((((..((((((.....)))).))..))))))...............)))).)).... ( -20.40)
>DroYak_CAF1 22816 100 + 1
GUCAACAAAACGCAUUCAAUCGAAUGCAUUUCCUCUGGUCGGCCAACUGCAUUUCGACCAAUUCACUUUUCGCUUUUAAUUAAAAAAUAUGUUUGCUUAU
((.((((....((((((....))))))........(((((((...........))))))).............................)))).)).... ( -18.90)
>consensus
GUCAACAAAACGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAUUUGACCAAUUCACUUUUGGCUUUUAAUUAAAAAAUAUGUUUGCUUAC
((.((((....((((((....)))))).........(((((((.....))....)))))..............................)))).)).... (-17.84 = -17.20 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:42 2006