Locus 4539

Sequence ID X_DroMel_CAF1
Location 11,955,212 – 11,955,317
Length 105
Max. P 0.645077
window7467

overview

Window 7

Location 11,955,212 – 11,955,317
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.77
Mean single sequence MFE -26.50
Consensus MFE -17.81
Energy contribution -17.21
Covariance contribution -0.60
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.67
SVM decision value 0.23
SVM RNA-class probability 0.645077
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11955212 105 + 22224390
CCACAAUUUGGUUUACCUUUUUGGCUCAACACAUUUUGGUUGC---------------UCCGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC
..(((((((((....))...(((((....(((((((((((.((---------------....)).)))...(((...(.....)...)))....)))))))).....)))))))))))). ( -23.80)
>DroSec_CAF1 43616 105 + 1
CCACAAUUUGGUUUACCUUUUUGGCUCCACACAAUUUGGCUGC---------------UCUGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC
..(((((((((....))...(((((..(((((.....(((.((---------------....)).)))...(((...(.....)...))).......))))).....)))))))))))). ( -24.50)
>DroEre_CAF1 22931 105 + 1
CCACAAUUUGGCUUACCUUUUUGGCUCAACACAUUUUGGCUGU---------------UCCGGCAGCCUUAGAUUCUCAUCCCGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC
..(((((((((....))...(((((....((((((((((((((---------------....))))))...(((...(.....)...)))....)))))))).....)))))))))))). ( -26.80)
>DroYak_CAF1 21962 105 + 1
CCACAAUUUGGCUUACCUUUUUGGCUCAACACAUUUUGGCUGC---------------UCCGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC
..(((((((((....))...(((((....(((((((((((.((---------------....)).)))...(((...(.....)...)))....)))))))).....)))))))))))). ( -24.60)
>DroAna_CAF1 18205 120 + 1
ACUCGCUUUCCUUUGGCUUUUUGGCUCAAUACAUUUUGGCUGCGGCUGCGGCCGGGGCUUCAGUUGCUUUUUAUCCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC
....(((.......)))((((((((....(((((((((((.(((((((.(((....))).)))))))................(.....))).))))))))).....))))))))..... ( -32.80)
>consensus
CCACAAUUUGGUUUACCUUUUUGGCUCAACACAUUUUGGCUGC_______________UCCGGCUGCCUUAGAUUCUCAUCCUGUUCAUCGCAUAAAGUGUGAAAAUGCCAAAAAUUGUC
.................((((((((....(((((((((((.((...................)).)))...............((.....))..)))))))).....))))))))..... (-17.81 = -17.21 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:40 2006