Locus 4538

Sequence ID X_DroMel_CAF1
Location 11,954,324 – 11,954,424
Length 100
Max. P 0.605558
window7466

overview

Window 6

Location 11,954,324 – 11,954,424
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.07
Mean single sequence MFE -24.23
Consensus MFE -17.43
Energy contribution -17.03
Covariance contribution -0.40
Combinations/Pair 1.10
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value 0.15
SVM RNA-class probability 0.605558
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11954324 100 + 22224390
-----U-CUCU--UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG---UCACCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC
-----.-....--................(((((((((....((((((((....((...(((((.......)))---))...))....--------.))-)))))))))))))))..... ( -22.50)
>DroSec_CAF1 42739 100 + 1
-----U-CUCU--UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCUUAGACAUCUAUUCCAUG---UCACCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC
-----.-....--.(((.(((.((.(((..((((.....(((((...(((((.....(((....)))...))))---)..)))))...--------..)-)))..))).))..))).))) ( -23.10)
>DroEre_CAF1 21718 101 + 1
-----UUCACU--UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG---UCGCCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC
-----..(((.--...)))..........(((((((((....((((((((....((...(((((.......)))---))...))....--------.))-)))))))))))))))..... ( -25.00)
>DroYak_CAF1 21027 102 + 1
-----U-CUCUUGUGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG---UCACCGUGUGU--------UUG-UUGUCUGGUGAUUGACCCAC
-----.-......................(((((((((....((((((((....((...(((((.......)))---))...))....--------.))-)))))))))))))))..... ( -22.50)
>DroAna_CAF1 17288 117 + 1
GAAUGG-AUUU--UGUGUAUAUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUACACUCGCCGUGUGUGUUUCUGUUUGUUUGUCUGGUGAUUGACCCAC
((((((-(...--...........)))))))(((((...((((.....))))....(((((((..((..((((((((.....))))))).....)..))..))))))))))))....... ( -28.04)
>consensus
_____U_CUCU__UGUGUGUUUUCUCCAUUCAAUCAUUUCAUGGACAACAUGUAGCCUAGACAUCUAUUCCAUG___UCACCGUGUGU________UUG_UUGUCUGGUGAUUGACCCAC
.............................(((((((...((((.....))))....(((((((...............(((...)))..............))))))))))))))..... (-17.43 = -17.03 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:39 2006