Locus 4537

Sequence ID X_DroMel_CAF1
Location 11,954,216 – 11,954,313
Length 97
Max. P 0.508273
window7465

overview

Window 5

Location 11,954,216 – 11,954,313
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.07
Mean single sequence MFE -18.10
Consensus MFE -11.89
Energy contribution -11.94
Covariance contribution 0.06
Combinations/Pair 1.15
Mean z-score -1.21
Structure conservation index 0.66
SVM decision value -0.05
SVM RNA-class probability 0.508273
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11954216 97 + 22224390
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACCCCCUCGCACCCUUCGU-------CC-----U-----------
.....................((((((.....((((.......))))......))))))(((((.((((((.((.....))..)))))).))))-------).-----.----------- ( -20.40)
>DroSec_CAF1 42618 107 + 1
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACACCC-CGUACCCUUCGC-------CC-----CACCCCUCUGCC
................................(((..........((((((........))))))(((((..(((((....-.)))))...)))-------))-----........))). ( -20.10)
>DroSim_CAF1 21670 107 + 1
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACACCC-CGUACCCUUCGC-------CC-----CGCCCCUCUGCC
................................(((..........((((((........))))))(((((..(((((....-.)))))...)))-------))-----........))). ( -20.10)
>DroEre_CAF1 21607 99 + 1
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGGACCCCC-G--------CCC-------CC-----CGCCCCCCAUCC
..((((..........................)))).........(((((.......)))))((((((.((.(((......-.--------..)-------))-----.))..)))))). ( -18.77)
>DroYak_CAF1 20923 92 + 1
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGUAGGGACCCCC-C--------UCU-------------------CUUGUCC
...((((((((..(((((...((((((.....((((.......))))......)))))))))))))))))))(((....))-)--------...-------------------....... ( -15.70)
>DroAna_CAF1 17133 115 + 1
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGCUGCUGA----CUC-UAUACCCUUCCUUUUCUGCCCAGCACAGCCCGUCUCUC
....((................((((...((((((..........(((((((((....))).))))))))))))----...-))))............(((...)))..))......... ( -13.50)
>consensus
GUUUGCAUUCAAUUCAUUCAAAUAUAUUUUCAGCAAUUUUUUCUUGUCAUUUCAUAUGUGAUGAUGGGUGCUGGUACCCCC_CGUACCCUUCCC_______CC_____CGCCCCUCUGCC
.............................((((((.......((..(((((........)))))..)))))))).............................................. (-11.89 = -11.94 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:38 2006