Locus 4535

Sequence ID X_DroMel_CAF1
Location 11,951,895 – 11,952,008
Length 113
Max. P 0.592714
window7462

overview

Window 2

Location 11,951,895 – 11,952,008
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.32
Mean single sequence MFE -22.40
Consensus MFE -15.89
Energy contribution -16.13
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.71
SVM decision value 0.12
SVM RNA-class probability 0.592714
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11951895 113 + 22224390
UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCGCACAAAAAAAAGGGGCGGG-------
(((((((.(....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).)))).....).)))))))..............------- ( -25.70)
>DroSec_CAF1 40366 108 + 1
UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAAAAGGGGCGGG-------
((((((.(.....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).))))....).))))-----))...........------- ( -21.50)
>DroEre_CAF1 19322 106 + 1
UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAAAAGGGGGC---------
((((((.(.....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).))))....).))))-----)).........--------- ( -21.50)
>DroYak_CAF1 18620 106 + 1
UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAAAAGAGGAG---------
((((((.(.....(((((.(((((((...........(((....))).))))))).)))))((((.(((........))).))))....).))))-----)).........--------- ( -21.50)
>DroAna_CAF1 14449 114 + 1
UUGUAAGCCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACU-UUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC-----AAACGGGGGUCGAGCUCUUG
((((..(((....(((((..((((((...........(((....))).))))-)).)))))((((.(((........))).)))).....)))))-----)).((((((.....)))))) ( -21.80)
>consensus
UUGUGCGGCAAGUGAAGGAAGAAGUUAAGUAAAAGAAUUCGAAGGGAAAACUUUUGCCUUCAAUGAAAUGAAAUAAAAUUGCAUUACAACGGCAC_____AAAAAGGGGCGG________
(((((..((((.((((((.(((((((...........(((....))).))))))).))))))................))))..)))))............................... (-15.89 = -16.13 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:35 2006