| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,940,800 – 11,940,898 |
| Length | 98 |
| Max. P | 0.991214 |
| Location | 11,940,800 – 11,940,898 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 90.00 |
| Mean single sequence MFE | -20.00 |
| Consensus MFE | -20.22 |
| Energy contribution | -20.00 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.21 |
| Structure conservation index | 1.01 |
| SVM decision value | 2.25 |
| SVM RNA-class probability | 0.991214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11940800 98 + 22224390 AAAAAAACAAAAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAA--AGAAAUGAAUAAAAUGAAAUCAAACCGCUCUCGGCGCUUCUC ....................(((((..((..(((((((.((((......))))...--..............((....)))))))))..)).)))))... ( -20.00) >DroSec_CAF1 23871 90 + 1 ----------AAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAAAGAGAAACGAAUAAAAUGAAAUCAAGCCGCUCUCGGCGCUUCUC ----------..........(((((..((..(((((((.((((......))))...................((....)))))))))..)).)))))... ( -20.00) >DroSim_CAF1 14566 90 + 1 ----------AAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAAAAAGAAACGAAUAAAAUGAAAUCAAGCCGCUCUCGGCGCUUCUC ----------..........(((((..((..(((((((.((((......))))...................((....)))))))))..)).)))))... ( -20.00) >consensus __________AAAUUGGCAAGAGCGAACGGAAGUGGUUGUCAAGUAAAAUUGAAAAA_AGAAACGAAUAAAAUGAAAUCAAGCCGCUCUCGGCGCUUCUC ....................(((((..((..(((((((.((((......))))...................((....)))))))))..)).)))))... (-20.22 = -20.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:25 2006