Locus 453

Sequence ID X_DroMel_CAF1
Location 1,338,539 – 1,338,647
Length 108
Max. P 0.657788
window693

overview

Window 3

Location 1,338,539 – 1,338,647
Length 108
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 70.58
Mean single sequence MFE -17.77
Consensus MFE -8.92
Energy contribution -9.08
Covariance contribution 0.16
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.50
SVM decision value 0.26
SVM RNA-class probability 0.657788
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1338539 108 - 22224390
AACGGCAUAAAUAAACAGC--UGUUUAUAUCUAAACACCUCGUUUUUUUUUUCU---GCAUAGCGUAGCCCAAUAUCACGUGCUUCCACCUUAUUAUGCACGAUAUAUUUACU
...(((..(((.((((((.--((((((....)))))).)).)))).)))....(---((.....)))))).(((((..(((((..............)))))..))))).... ( -17.54)
>DroSec_CAF1 4410 99 - 1
AACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAACACCUCGUGUUUCCA-UUU---GCAUAGCGUAGUCUUGUAUCACGUGCU----------UAUGCACGAUUUAUUUACU
.......((((((((..(((.(((..((....((((((...))))))..)-)..---))).)))..............(((((.----------...))))).)))))))).. ( -19.90)
>DroSim_CAF1 728 99 - 1
AACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAACACCUCGUGUUUCCA-UUU---GCAUAGCGUAGUCUUGUAUCACGUGCU----------UAUGCACGAUUUAUUUACU
.......((((((((..(((.(((..((....((((((...))))))..)-)..---))).)))..............(((((.----------...))))).)))))))).. ( -19.90)
>DroEre_CAF1 5462 91 - 1
CACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAGCUCCUCGUGUUUUCA-UUUUUA---------------UUACCACGUGCUUUCACCCUACCAUGCACGAUAUC------
..((((((..(((((((....)))))))....((((....((((......-......---------------....)))).))))..........)))).)).....------ ( -15.59)
>DroYak_CAF1 4405 96 - 1
CACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAGCACCUAUUGUUUUCA-UUUUCUGCAUACCGUAGUGC-AUACCACGUGCUUUCACCUCACGAUG---------------
...(((((..(((((((....)))))))......((((.(((.((...((-.....))...)).)))))))-.......)))))..............--------------- ( -15.90)
>consensus
AACGGCAUAAAUAAACAGCUCUGUUUAUAUCUAAACACCUCGUGUUUUCA_UUU___GCAUAGCGUAGUCC_AUAUCACGUGCUU_CACC__A_UAUGCACGAUAUAUUUACU
...(((((..(((((((....)))))))....(((((.....)))))................................)))))............................. ( -8.92 =  -9.08 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:53 2006