Locus 4529

Sequence ID X_DroMel_CAF1
Location 11,937,886 – 11,937,994
Length 108
Max. P 0.859506
window7445

overview

Window 5

Location 11,937,886 – 11,937,994
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 91.86
Mean single sequence MFE -34.44
Consensus MFE -28.92
Energy contribution -29.92
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.84
SVM decision value 0.82
SVM RNA-class probability 0.859506
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11937886 108 - 22224390
AACUAGGAACAACUUAUGUACGUGGAAAUGCCAGCCCUCGUCGAAUCGGUUGGCUUGGCAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC
..(((.(.(((.....))).).)))....(((((((...........)))))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). ( -33.90)
>DroSec_CAF1 21022 104 - 1
AACUAGGAACCACUU----ACGUGGAAAUGCCAGCCCUCGUCGAAUUGGUUGGCUUGACAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACAUCCUGGCGUUGCCC
.....((..((((..----..)))).((((((((.....(((.(((.(((((......)))))((((.((.....)))))).....))).)))...)))))))).)). ( -34.30)
>DroSim_CAF1 11739 104 - 1
AACUAGGAACCACUU----ACGUGGAAUUGCCAGCCCUCGUCGAAUUGGUUGGCUUGGCAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACAUCCUGGCGUUGCCC
.........((((..----..))))....(((((((...........)))))))..((((((..(((.((((....((.((((....)))).))))))))))))))). ( -36.40)
>DroEre_CAF1 5548 104 - 1
AACUAGGAACCACUU----ACGUGGAAAUGCCAUCCCUCGUCGACUUGGUUGGCUUGGCAACUGGCCUAGGAAUACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC
.........((((..----..))))....((((..((..(....)..)).))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). ( -31.20)
>DroYak_CAF1 5230 104 - 1
AACUGGCAGCCACUU----ACGUGGAAAUGCCAUCCCUCGUCGAAUUGGUUGACUUGGCAACUGGCCUAGGUAUACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC
...(((((.((((..----..))))...)))))......(((((.....)))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). ( -36.40)
>consensus
AACUAGGAACCACUU____ACGUGGAAAUGCCAGCCCUCGUCGAAUUGGUUGGCUUGGCAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC
.........((((........))))....(((((((...........)))))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). (-28.92 = -29.92 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:21 2006