Locus 4526

Sequence ID X_DroMel_CAF1
Location 11,930,999 – 11,931,091
Length 92
Max. P 0.761326
window7441

overview

Window 1

Location 11,930,999 – 11,931,091
Length 92
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.11
Mean single sequence MFE -30.54
Consensus MFE -16.11
Energy contribution -16.00
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.42
Structure conservation index 0.53
SVM decision value 0.50
SVM RNA-class probability 0.761326
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11930999 92 - 22224390
UGGCAGG--------------------CCUCAUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUU--GGCCGUCUCG-UUUUUACGACGC-----
.((((((--------------------..(((..(((((((((((.(((((....))))).)).....)))))))))...)))..)))..--.)))((.(((-(....)))).))----- ( -27.50)
>DroVir_CAF1 18730 120 - 1
CGACGGGCGUGGUGGAGGGGAUGGUUUACUCGUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUUUUGGCCGCAACGAUUUUUACGAUGCCUCCG
....((((((((((((((((((.(.......((.(((((((((((.(((((....))))).)).....))))))))).))).)))))))))..)))))..((.......))..))))... ( -36.21)
>DroSec_CAF1 14243 91 - 1
UGGCAGG--------------------CCUCAUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUU---GCCGUCUCG-UUUUUACGACGC-----
.((((((--------------------..(((..(((((((((((.(((((....))))).)).....)))))))))...)))..))..)---)))((.(((-(....)))).))----- ( -27.90)
>consensus
UGGCAGG____________________CCUCAUAAAGUAUGUCAUGUGUCAUAAAUGACAGAUUCUUAGGCAUACUUCAUUGAUCCCUUU__GGCCGUCUCG_UUUUUACGACGC_____
.............................(((..(((((((((((.(((((....))))).)).....)))))))))...))).............((.(((.......))).))..... (-16.11 = -16.00 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:17 2006