| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,923,898 – 11,924,004 |
| Length | 106 |
| Max. P | 0.998242 |
| Location | 11,923,898 – 11,924,004 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.61 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -13.37 |
| Energy contribution | -13.27 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.69 |
| SVM decision value | 3.04 |
| SVM RNA-class probability | 0.998242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11923898 106 - 22224390 AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAA-UGGCUACAGCAGUAGCCACACAAGGAGCAAGAGCAGAAGCAGUAGCAUGAGGUCAAUCU------------- ........(((((...(((((.(((((..((....))..))))))))-))(((((.((.....((......)).((....))....)).))))))))))........------------- ( -20.70) >DroVir_CAF1 8753 111 - 1 AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAAUUGGUUACAGAAGUAGCCA----ACGGUCCAGACCAGACCAA-----ACCAACCCAAUCUCUGACCAACAUCU ......................(((((..((....))..)))))...((((((((....)))))))----).((((.(((.........-----............)))))))....... ( -16.80) >DroSec_CAF1 5183 94 - 1 AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAA-UGGCUACAGCAGUAGCCACACAAGGAGCAGGAGCAGGA------------GCUCAAUCU------------- ........(((...........(((((..((....))..)))))...-(((((((....)))))))......)))...((((....------------)))).....------------- ( -20.70) >consensus AUUAUCAACUCAUAAAUAUUUAUUGAAUUUUAAGAAAUUUUCAAAAA_UGGCUACAGCAGUAGCCACACAAGGAGCAAGAGCAGAA__A_____A__AGCUCAAUCU_____________ ....((..(((...........(((((..((....))..)))))....(((((((....)))))))............)))..))................................... (-13.37 = -13.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:14 2006