| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,923,001 – 11,923,116 |
| Length | 115 |
| Max. P | 0.990694 |
| Location | 11,923,001 – 11,923,116 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.50 |
| Mean single sequence MFE | -40.77 |
| Consensus MFE | -27.89 |
| Energy contribution | -28.50 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.68 |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.990694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11923001 115 - 22224390 AGCGGUGCAUCUGGGAGUCAUCGGUUACGGGGCCUCACCUGUGACCCCUUGACCCCA-CUGGACGGGCCAUCUGCACCCUAACGGGGCAGCCUUAACCCCUUGACCCUUUGAGCAA---- .((.((.((..((((.((((..(((((((((......)))))))))...))))))))-.)).))(((....((((.(((....)))))))......))).............))..---- ( -48.30) >DroSim_CAF1 3215 96 - 1 AGCGGUGCAUCUGGGAGUCAUCGGUUACGGGG-CUCACCUGUGACCCCUUGAACCCA-CUGGGCGGG------------------UGCAGCCUUAACCCCUUGACCCUUUGAACAC---- ....((.((...(((.((((..(((((..(((-((((((((...(((..((....))-..)))))))------------------)).))))))))))...))))))).)).))..---- ( -35.60) >DroYak_CAF1 2488 114 - 1 AGCGGUGCAUCUGGGAGUCAUCGGUAACAGGG-CUCACCUGUGACCCCUUGACCCCAACUGGG----UCCCCUUC-CCCAAUCGGCGCACCCCUAACCCCUUGAACCCUUGGCCCCUUUG ((.(((((..(((((.((((..(((.(((((.-....))))).)))...))))))))..((((----........-))))...)..))))).))....((..(....)..))........ ( -38.40) >consensus AGCGGUGCAUCUGGGAGUCAUCGGUUACGGGG_CUCACCUGUGACCCCUUGACCCCA_CUGGGCGGG_C__CU_C_CCC_A_CGGCGCAGCCUUAACCCCUUGACCCUUUGAACAC____ ...(((((...((((.((((..(((((((((......)))))))))...))))))))....................((....)).))).))............................ (-27.89 = -28.50 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:13 2006