| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,922,518 – 11,922,629 |
| Length | 111 |
| Max. P | 0.883072 |
| Location | 11,922,518 – 11,922,629 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -13.31 |
| Consensus MFE | -13.25 |
| Energy contribution | -13.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.56 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11922518 111 + 22224390 UCCCACUCC---------CACUCCCAUCCUUUAGUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGAAGCGAUUUUCAAACU .........---------..............((((.......((((........((((.(((((((....)))..)))).)))).........((((....))))))))......)))) ( -13.22) >DroSim_CAF1 2733 102 + 1 ------------------CACGCCCACCCUUUAGUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGAAGCGAUUUUCAAACU ------------------..............((((.......((((........((((.(((((((....)))..)))).)))).........((((....))))))))......)))) ( -13.22) >DroYak_CAF1 2036 120 + 1 ACCCACUUGCAAUCCCCACCCACCCACCAUUCACUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGGAGCGAUUUUCAAACU ...........................................((((..(((...((((.(((((((....)))..)))).))))((....))........)))..)))).......... ( -13.50) >consensus _CCCACU___________CACACCCACCCUUUAGUUACUCAUCUCGCAACGUAAUUGGUCUGUAUACAAUUGUAAUUAUAAACCACUAAUAAGAUUCGAACACGAAGCGAUUUUCAAACU ...........................................((((........((((.(((((((....)))..)))).)))).........((((....)))))))).......... (-13.25 = -13.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:13 2006