Locus 4520

Sequence ID X_DroMel_CAF1
Location 11,918,119 – 11,918,232
Length 113
Max. P 0.635969
window7434

overview

Window 4

Location 11,918,119 – 11,918,232
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.13
Mean single sequence MFE -36.12
Consensus MFE -27.40
Energy contribution -28.09
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.635969
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11918119 113 + 22224390
CUGAGUUUUG-----GUUUUUUGGGCUUCGCUUUGGCUGCUUCAUUUGGCUCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG--CUCCAGCCUGCAGCCG
..((((...(-----(((.....))))..)))).((((((.......((((..((((((((((....)).(((((((((.....)))))))))))))...))--))..)))).)))))). ( -37.10)
>DroEre_CAF1 26693 113 + 1
CCGAGUUUUG-----GUUUUUUGGGUCUCGCUUUGGCUGCUUCAUUUGGCCCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG--CUCCAGCCUGCAGCCG
.((((.((..-----(....)..)).))))....((((((.......(((...((((((((((....)).(((((((((.....)))))))))))))...))--))...))).)))))). ( -37.40)
>DroYak_CAF1 29611 113 + 1
CUGAGUUUUG-----GUUUUUUGGGUUUCGCUUUGGCUGCUUCAUUUGGCUCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG--CCUCAGCCUGCAGCCU
..(((.((..-----(....)..)).))).....((((((.......((((..((((((((((....)).(((((((((.....)))))))))))))...))--))..)))).)))))). ( -38.20)
>DroAna_CAF1 51647 117 + 1
CUGAGUUGUGUGUUUUUUUUUCGGGUUUCACUUUGGCUGCUUCAUUUGGCUCUGGAAACAUGCAACAGCA---GCAGUCAACGCGAUUGCUUUAUGUCUAUGUUCUCCAGCCUCCAGCCG
(((((..(........)..)))))..........(((((........((((..(((((((((..(((..(---((((((.....)))))))...))).)))))).)))))))..))))). ( -31.80)
>consensus
CUGAGUUUUG_____GUUUUUUGGGUUUCGCUUUGGCUGCUUCAUUUGGCUCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG__CUCCAGCCUGCAGCCG
(((((..............)))))..........((((((.......((((..((...((((..(((...(((((((((.....))))))))).))).))))..))..)))).)))))). (-27.40 = -28.09 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:10 2006