Locus 452

Sequence ID X_DroMel_CAF1
Location 1,335,240 – 1,335,336
Length 96
Max. P 0.828329
window692

overview

Window 2

Location 1,335,240 – 1,335,336
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -24.27
Consensus MFE -20.66
Energy contribution -20.90
Covariance contribution 0.24
Combinations/Pair 1.37
Mean z-score -1.41
Structure conservation index 0.85
SVM decision value 0.71
SVM RNA-class probability 0.828329
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1335240 96 - 22224390
GAACGCACUUUUUGAACUUAACGAACGGUGCUUACACUGAGCCCUCGAAGGGGGGUCAUUUGCAAAUGGUUUAUUACAUUGGAUUAAACAAUAUAU
(((((((((.((((.......)))).)))))......(((.(((((....))))))))..........)))).....((((.......)))).... ( -23.00)
>DroEre_CAF1 2327 96 - 1
GAAGGUACAUUUUAAACGUAACGAACGUUGCUUACAGUGGGCCCUCGAAAGAGUGUCAGUUGCAUAUCAUUUAUUACAUUGAGUGAAACAAGCUUU
..............(((((.....)))))((((.(((..(((.(((....))).)))..)))....(((((((......)))))))...))))... ( -22.50)
>DroYak_CAF1 1225 96 - 1
GAAGGCACAUUUUGAACGCAACGGACUGUGCUUACAGUGGGCCCUCGAAAGAUGGCCAGAUGCAUAUCAUUUAUUACAUGAAGUGAAACAAGCUUU
.(((((...........(((.(..(((((....))))).((((.((....)).)))).).)))...((((((........)))))).....))))) ( -27.30)
>consensus
GAAGGCACAUUUUGAACGUAACGAACGGUGCUUACAGUGGGCCCUCGAAAGAGGGUCAGUUGCAUAUCAUUUAUUACAUUGAGUGAAACAAGCUUU
..(((((((.((((.......)))).))))))).((...(((((((....)))))))...))....(((((((......))))))).......... (-20.66 = -20.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:52 2006