Locus 4515

Sequence ID X_DroMel_CAF1
Location 11,913,886 – 11,913,986
Length 100
Max. P 0.846839
window7427

overview

Window 7

Location 11,913,886 – 11,913,986
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.58
Mean single sequence MFE -18.09
Consensus MFE -11.11
Energy contribution -12.00
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.61
SVM decision value 0.77
SVM RNA-class probability 0.846839
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11913886 100 - 22224390
AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAUGCUUAAUAUUCAG-----ACUUUCGGAUACCCGCCAAUAGAAAU---------------
.(((((((....))).......(((((((....)).))))).......(((((((....((.....)).....)-----))))))))))................--------------- ( -19.10)
>DroSec_CAF1 23746 94 - 1
AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAU------UAUUCAG-----ACUUUCGGAUACCCGCCAAUCGAAAU---------------
.(((((((....))).......(((((((....)).))))).......(((((((......------......)-----))))))))))................--------------- ( -19.50)
>DroSim_CAF1 21711 100 - 1
AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAUUGUCAAUAUUCAG-----ACUUUCGGAUACCCACCAAUCGAAAU---------------
.(((((((....))).......(((((((....)).))))).......(((((((..................)-----))))))))))................--------------- ( -19.07)
>DroEre_CAF1 22048 95 - 1
AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGCUUAUGCCCUUUAUUCAG-----ACUUCCGGAUACCCGCCAA-----UU---------------
.(((((((....)))........(((.(((...(((((((..........)))))))...))).))).......-----......)))).........-----..--------------- ( -19.70)
>DroYak_CAF1 25015 100 - 1
AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUCUUUCUGCUUAUUAUUCAG-----ACUUUCGGAUACCCGCCAAACCAAAU---------------
.(((((((....))).......(((((((....)).))))).......(((((((..................)-----))))))))))................--------------- ( -18.47)
>DroAna_CAF1 45873 117 - 1
AACAGAGCCAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGAAGUUCCA---AAAAAUUCGAAUCCGGCUAAUAAAUACCUGAACAUAAAAAUAGGUUAAAAUAUUUA
.....((((.............(((((((....)).)))))...........(((......---.....)))......)))).......(((((..........)))))........... ( -12.70)
>consensus
AGUCCGGCAAAAGCCAUAAAAACAAGUGCAAAUGCAAUUUGAAAACAAGAAAGUUGUUCAUGCUCAAUAUUCAG_____ACUUUCGGAUACCCGCCAAUCGAAAU_______________
.(((((((....))).......(((((((....)).))))).......(((((...........................)))))))))............................... (-11.11 = -12.00 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:04 2006