Locus 4513

Sequence ID X_DroMel_CAF1
Location 11,910,819 – 11,910,934
Length 115
Max. P 0.886477
window7422

overview

Window 2

Location 11,910,819 – 11,910,934
Length 115
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 74.59
Mean single sequence MFE -17.53
Consensus MFE -8.19
Energy contribution -9.31
Covariance contribution 1.12
Combinations/Pair 1.24
Mean z-score -2.01
Structure conservation index 0.47
SVM decision value 0.94
SVM RNA-class probability 0.886477
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11910819 115 + 22224390
UUCACGAUUCAGGAUUCC--CCAUUUUACUACCAAUACUCCAAAGACCAACAAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUACAAAAUGAUCACAACAGGGAAUAAAACACAAA
......((((.(((((((--....((((.(((((......................))))).))))..)))))))...((((.........))))........)))).......... ( -15.75)
>DroSec_CAF1 20880 102 + 1
UU-------CAGCAUUCC--CCAUUUUAUUACUAUCACU------ACUAUUCAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUGAAAAAUGAUCACAACAUGAAAUAAAACAAAAC
((-------((..(((((--....(((((((((((....------..........)))))))))))..))))).....((((((....)).))))......))))............ ( -17.04)
>DroSim_CAF1 18726 102 + 1
UU-------CAGCAUUCC--CCAUUUUAUUACUAUCACU------ACUAUUCAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUGAAAAAUGAUCACAACAUGGCAUAAAACAAAAC
..-------..(((((((--....(((((((((((....------..........)))))))))))..))))).....((((((....)).))))........))............ ( -17.74)
>DroEre_CAF1 19115 104 + 1
UU-------CAGCCUGCC--CCAUUUUGUGCCCACUGCUUCAAAUAC----CAAAGUGCUAAUAAAUCGGCAUUUUUAGAUCUUGAGAAAGUAUCACAACGCGGAAUAAAACAAUAA
..-------....((((.--.....(((((...(((..(((((((..----.((((((((........))))))))...)).)))))..)))..))))).))))............. ( -17.90)
>DroYak_CAF1 21957 105 + 1
UU-------UAGCUUUCCCCCCUUUUUUUGUCUGCCACUUCAAAGAC----CACAGUGGCAAUAAAUCGG-AGUUUAAGAUCUUGAAAAAUGAUCACAACAUGGAAUAAAAUAAUCA
..-------.....((((..((....(((((.(((((((........----...))))))))))))..))-.(((...((((((....)).))))..)))..))))........... ( -19.20)
>consensus
UU_______CAGCAUUCC__CCAUUUUAUUACUACCACU_CAAA_AC_A__CAAAGUGGUAAUAAAUCGGAAUUUAAAGAUCUUGAAAAAUGAUCACAACAUGGAAUAAAACAAAAA
....................((..(((((((((((....................)))))))))))..))........((((.........))))...................... ( -8.19 =  -9.31 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:59 2006