Locus 4510

Sequence ID X_DroMel_CAF1
Location 11,902,069 – 11,902,175
Length 106
Max. P 0.820385
window7418

overview

Window 8

Location 11,902,069 – 11,902,175
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.61
Mean single sequence MFE -21.02
Consensus MFE -19.04
Energy contribution -18.65
Covariance contribution -0.39
Combinations/Pair 1.15
Mean z-score -1.54
Structure conservation index 0.91
SVM decision value 0.68
SVM RNA-class probability 0.820385
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11902069 106 + 22224390
UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCACAAAUGA
(((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00)
>DroVir_CAF1 7745 120 + 1
UCAUAAAGUUUUGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCACGAAAUAACUUCAACUUGUAUGCAAAUAAGUGGAAAAACAUUCAUACAUGG
.(((...((((((((((((((..........(((((((...(((....)))...)))))))))))))))))))))...(((.((((((......)))))).)))............))). ( -25.80)
>DroSim_CAF1 11527 106 + 1
UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCACAAAUAA
(((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00)
>DroEre_CAF1 10319 106 + 1
UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCGCAAAUAA
(((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00)
>DroYak_CAF1 12754 106 + 1
UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU--------------CCACAAAUGA
(((.....(((((((((((((..........(((((((...(((....)))...)))))))))))))))))))).....)))..............--------------.......... ( -20.00)
>DroAna_CAF1 30362 105 + 1
UCAUAAAGUUUCGUGUUAU-AAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGGAAGAGCUUGCAUUUUAAUACGAAC--------------CUACAAAUGG
......((.(((((((((.-..(((((.((.(((((((...(((....)))...))))))).....((........)))).)))))))))))))).--------------))........ ( -20.30)
>consensus
UCAUAAAGUUUCGUGUUAUUAAAAAUGGAAUAUAUUCUCGCGCGAAUACGCAAUGGAAUAUUAAUAGCAUGAAAGAGCUUGAAUUUUAAUACAGAU______________CCACAAAUGA
.....((((((((((((((((..........(((((((...(((....)))...)))))))))))))))))))...))))........................................ (-19.04 = -18.65 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:55 2006