| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,334,947 – 1,335,065 |
| Length | 118 |
| Max. P | 0.584197 |
| Location | 1,334,947 – 1,335,065 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -44.77 |
| Consensus MFE | -28.62 |
| Energy contribution | -28.32 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1334947 118 - 22224390 AGAUUUAGUCUUUACCUCCUUCUUCUUCUGCUCCAGGCUGACCUGCACGGCGGCGUCGAACUCGCGUCGGUCGCGCACGCGCUGCUCGCUGCGCAGGUGGAAGGGUCUGGAGCGGGUA ..........................(((((((((((((.((((((.((((((((.((....((((.....))))....)).))).))))).)))))).....))))))))))))).. ( -52.70) >DroPse_CAF1 5230 109 - 1 --------CAUUUACCUCUUUUUUCUUCUUCUCCAGGCUGACCUGCACAGCAGCGUCAUAUUCGCGGCGCUCGCGCACGCGCUGAUCGCUGCGCAGCUGGAACGGUCUGGGAUGG-CA --------..................((.((.((((((((.((.((...(((((((((....(((((((....))).)))).))).))))))...)).))..)))))))))).))-.. ( -43.10) >DroEre_CAF1 2088 118 - 1 AGAUUUAGUCUUUACCUCCUUCUUCUUCUGCUCCAGGUUGACCUGCACGGCGGAGUCGAACUCCCGCCGGUCGCGCACGCGUUGCUCGCUGCGCAGAUGAAAGGGUCUGGGGUGGGUG ..........................((..(((((((....(((...((((((((.....)).))))))((((((((.(((.....)))))))).)))...))).)))))))..)).. ( -45.10) >DroYak_CAF1 933 118 - 1 AGAGUUAGUCUUUACCUCCUUCUUCUUCUGCUCCAGGCUGGCCUGCACGGCGGCGUCGAACUCGCGCCGGUCGCGCACGCGCUGCUCGCUGCGCAGAUGGAAUGGUUUGGAUCGGGUG ..(.(..((((..(((...((((...(((((..((((....))))..((((((((.((....))))))(((.(((....))).))).)))).))))).)))).)))..))))..).). ( -44.50) >DroAna_CAF1 865 109 - 1 --------UAUUUACCUCAUUUUUCUUCUGCUCCAAACUCGCCUGCACAGCAGCGUCGUAUUCGCGCCGUUCGCGCAGGCGCUGUUCGCUGCGAAGCUGGAACGGCUUGGGCUG-GCA --------..................((.((.((((....((((((.((((.(((.((....))))).))).).))))))((((((((((....)))..))))))))))))).)-).. ( -40.10) >DroPer_CAF1 5218 109 - 1 --------CAUUUACCUCUUUUUUCUUCUUCUCCAGGCUGACCUGCACAGCAGCGUCAUAUUCGCGGCGCUCGCGCACGCGCUGAUCGCUGCGCAGCUGGAACGGUCUGGGAUGG-CA --------..................((.((.((((((((.((.((...(((((((((....(((((((....))).)))).))).))))))...)).))..)))))))))).))-.. ( -43.10) >consensus ________UAUUUACCUCCUUCUUCUUCUGCUCCAGGCUGACCUGCACAGCAGCGUCGAACUCGCGCCGGUCGCGCACGCGCUGCUCGCUGCGCAGCUGGAACGGUCUGGGAUGGGCA ...........................(((.(((((((((((((((...)))).)))...............(((((.(((.....)))))))).........)))))))).)))... (-28.62 = -28.32 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:51 2006