Locus 4505

Sequence ID X_DroMel_CAF1
Location 11,892,246 – 11,892,353
Length 107
Max. P 0.776407
window7409

overview

Window 9

Location 11,892,246 – 11,892,353
Length 107
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -21.12
Consensus MFE -13.38
Energy contribution -15.02
Covariance contribution 1.64
Combinations/Pair 1.08
Mean z-score -1.58
Structure conservation index 0.63
SVM decision value 0.54
SVM RNA-class probability 0.776407
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11892246 107 - 22224390
CAAAUUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU--AUUAUCAAAUAUGUGUACACUGCAAUUAUAU--------UGAUAUCAUAAAUUCCU
..(((((((((....((((((....)).))))................((((((((((.--.....))))))))))...)))))))))....--------................. ( -21.50)
>DroSec_CAF1 2789 115 - 1
CAAAUUGCGGUUUUCGUGAGUCUAGACAACACAAUACAUACAGGCAGCCAUAUAUUUGU--AUUAUCAAAUAUGUACACACUGCAAUUAUAUAGAAGAGCUGAUAUCAUGAAUUUAU
..(((((((((....(((.((((..................))))....(((((((((.--.....))))))))).))))))))))))............................. ( -19.37)
>DroSim_CAF1 3606 115 - 1
CAAAUUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU--AUUAUCAAAUAUGUAUACACUGCAAUUAUAUGGAAGAGCUGAUAUCAUGAAUUUAU
............(((((((((....)))............(((((..(((((((.((((--(.(((((....)).)))...))))).)))))))...)))))....))))))..... ( -22.30)
>DroEre_CAF1 3267 102 - 1
CAAAUUGCGGUUUUCGCGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU--AUUAUCAAAUAUGUAUACACUGCAAUUAUGUGCAAAG-------------GUUCAU
..(((((((((.(..((((((...((.(((((((...(((..(....)..)))..))))--))).))..))))))..).)))))))))(((.((....-------------)).))) ( -19.30)
>DroYak_CAF1 3589 99 - 1
CAAAGUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAU--------------AUCUGU--AUUAUCAAAUAUGUAUACACUGCAAUUAUUUGAAAAACCAGACAUCA--AAUCCAU
....(((.(((((....((((((.(..((((((......--------------...)))--))).(((((((((((.....))))..)))))))....).)))))).)--))))))) ( -16.90)
>DroAna_CAF1 18928 117 - 1
CACAUUGCGGUUUUCGUGUGUCUAGACAACACAAUGAAUUCAGUUAGUCAUAUAUUUGUCCAUUAUCAAAUAUGUGUACACUGAGCGCAAAUAAAACACCUGACACCAAAGACUUCU
......(.((((((.(.(((((............((..((((((..((((((((((((........)))))))))).))))))))..))............)))))).)))))).). ( -27.35)
>consensus
CAAAUUGCGGUUUUCGUGUGUCUAGACAAUACAAUAAAUACAGUUAGCCAUAUAUUUGU__AUUAUCAAAUAUGUAUACACUGCAAUUAUAUGAAAAA_CUGAUAUCAU_AAUUCAU
..(((((((((....((((((....)).)))).................(((((((((........)))))))))....)))))))))............................. (-13.38 = -15.02 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:47 2006