Locus 4502

Sequence ID X_DroMel_CAF1
Location 11,887,902 – 11,888,009
Length 107
Max. P 0.868486
window7406

overview

Window 6

Location 11,887,902 – 11,888,009
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 95.30
Mean single sequence MFE -21.73
Consensus MFE -17.50
Energy contribution -17.26
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.81
SVM decision value 0.86
SVM RNA-class probability 0.868486
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11887902 107 - 22224390
CACUUGCUCCUCCACACUGUUUUCAUUUCCUUCCUUGCUCGUGGACAUAUGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC
..........(((((...((................))..)))))(((((....))))).((((((((((....))..........))))))))............. ( -21.09)
>DroSec_CAF1 19788 106 - 1
CACUUGCUCCUGCACACUGUUUUCAUUUCCUUCC-UGCUCGUGGACAUAUGUAAAUACGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC
...((((((((((((.((((((.(((.....(((-.......)))...))).))))).).))))))..))))))................................. ( -22.20)
>DroSim_CAF1 24195 106 - 1
CACUUGCUCCUCCACACUGUUUUCAUUUCCUUCC-UGCUCGUGGACAUAUGUAAAUACGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC
...((((...(((((...((..............-.))..))))).....))))......((((((((((....))..........))))))))............. ( -19.56)
>DroEre_CAF1 21222 105 - 1
CACUUGGUCCGCCUCACUGUUUUCAUUUCCUUC--AGCUCGUGGACAUAUGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC
...(((((((((....(((.............)--))...))))))..............((((((((((....))..........))))))))...)))....... ( -23.22)
>DroYak_CAF1 23895 103 - 1
CACUUGCUCCUGCUCACUGUUUUCAUUUCCUUC--AGCUCGUGGACA--UGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC
...((((((.((((((((((((.(((.(((...--.......))).)--)).))))...)))).))))))))))................................. ( -22.60)
>consensus
CACUUGCUCCUCCACACUGUUUUCAUUUCCUUCC_UGCUCGUGGACAUAUGUAAAUAUGAGUGCAGCAGAGCAAUCAUAACAAAAAUGCUGCACACUCAAAUUAUCC
....................................(((((((.((....))...)))))))((((((((....))..........))))))............... (-17.50 = -17.26 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:44 2006