Locus 45

Sequence ID X_DroMel_CAF1
Location 206,233 – 206,327
Length 94
Max. P 0.576213
window56

overview

Window 6

Location 206,233 – 206,327
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 73.14
Mean single sequence MFE -33.48
Consensus MFE -16.24
Energy contribution -18.18
Covariance contribution 1.95
Combinations/Pair 1.20
Mean z-score -1.67
Structure conservation index 0.48
SVM decision value 0.09
SVM RNA-class probability 0.576213
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 206233 94 - 22224390
CUCUUUGUCGGACUGCUCCGCGGAGGA---GUCCAGCGCUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGAAGAAAUAUAU----GAAAAAUGUGUUCC
.(((((..((((.(.((((((.(((((---(...((((.....)))).)))))).)))))).).))))...)))))(((((((----.....))))))).. ( -36.20)
>DroPse_CAF1 998 101 - 1
CUCCUUGGCCGCCUGCUCUCCUGAGGCACCGUCCGACGAUGAGUGCUCCUCCUCAGCGGGAACUUCUGCAAGGAAUAACAACAGGAGUGAGUAUGAGUUGC
.......((.(((((((((((((.(((((((((....)))).)))))..((((..(((((....))))).)))).......)))))..))))).).)).)) ( -32.30)
>DroSec_CAF1 1305 89 - 1
CUCUUUGUCGGACUGCUCCGCGGAGGA---GUCCAGCGCUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGAAGAAAUGGAU---------AUAUGAUUA
.(((((..((((.(.((((((.(((((---(...((((.....)))).)))))).)))))).).))))...))))).......---------......... ( -33.70)
>DroEre_CAF1 2017 98 - 1
CUCUUUGUCGGACUGCUCCGCGGAGGA---GUCCAUCGAUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGGAGAAAUAAAUUGAUUAAAAAUUUGCUCC
(((((((.((((.(.((((((((((((---((............))))))))...)))))).).)))))))))))...((((((.......)))))).... ( -35.60)
>DroYak_CAF1 1259 98 - 1
CUCUUUGUCGGACUGCUCCGCGGUGGA---GUCCGGCGAUAAAUGCUCCUCCUCAGCAGGGGACUCUGUAAAGAUGAGUGGAUUGAUUAAGAAUGUGUUCA
.((((.(((((.(..(((..(.(..((---((((((((.....))))...(((....)))))))))..)...)..)))..).))))).))))......... ( -30.30)
>DroPer_CAF1 998 101 - 1
CUCCUUGGCCGCCUGCUCUCCGGAGGCACCGUCCGAUGAUGAGUGCUCCUCCUCAGCGGGAACUUCUGAAAGGAAUAACAACAGGAGUGAGUAUGGGUUGC
......((((.((((((....((((((((((((....)))).))))..))))..)))))).(((((((...(......)..))))))).......)))).. ( -32.80)
>consensus
CUCUUUGUCGGACUGCUCCGCGGAGGA___GUCCAGCGAUAAAUGCUCCUCCUCAGCGGGGGACUCUGUAAGGAGAAAUAAAU_GA_UAAGAAUGUGUUCC
.((((((.((((.(.((((((.(((((...(..((........))..).))))).)))))).).))))))))))........................... (-16.24 = -18.18 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:13 2006