Locus 4495

Sequence ID X_DroMel_CAF1
Location 11,882,417 – 11,882,514
Length 97
Max. P 0.910866
window7393

overview

Window 3

Location 11,882,417 – 11,882,514
Length 97
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 96.45
Mean single sequence MFE -22.82
Consensus MFE -21.40
Energy contribution -21.53
Covariance contribution 0.13
Combinations/Pair 1.07
Mean z-score -2.06
Structure conservation index 0.94
SVM decision value 1.07
SVM RNA-class probability 0.910866
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11882417 97 - 22224390
UUAACAAACAAUUGGCAUGUUUUUGACUUUUUGCUGCUCGGCGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU---U
.(((((((((((..(((((((.(((((........).)))).)))))))..)))))....)))))).....(((.(((.....))).)))......---. ( -21.50)
>DroSec_CAF1 14302 97 - 1
UUAACAAACAAUUGGCAUGUUUUUGGCUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU---U
.(((((((((((..(((((((.(((((........)).))).)))))))..)))))....)))))).....(((.(((.....))).)))......---. ( -24.40)
>DroSim_CAF1 16741 97 - 1
UUAACAAACAAUUGGCAUGUUUUUGGCUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU---U
.(((((((((((..(((((((.(((((........)).))).)))))))..)))))....)))))).....(((.(((.....))).)))......---. ( -24.40)
>DroEre_CAF1 15655 100 - 1
UUUACAAACAAUUGGCAUGUUUUUGGUUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAUUAUU
......((((((..(((((((.(((((........)).))).)))))))..))))))..............(((.(((.....))).))).......... ( -21.00)
>consensus
UUAACAAACAAUUGGCAUGUUUUUGGCUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU___U
.(((((((((((..(((((((.(((((........)).))).)))))))..)))))....)))))).....(((.(((.....))).))).......... (-21.40 = -21.53 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:33 2006