Locus 4490

Sequence ID X_DroMel_CAF1
Location 11,876,395 – 11,876,497
Length 102
Max. P 0.884717
window7380

overview

Window 0

Location 11,876,395 – 11,876,497
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 97.55
Mean single sequence MFE -28.38
Consensus MFE -25.68
Energy contribution -26.12
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.90
SVM decision value 0.93
SVM RNA-class probability 0.884717
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11876395 102 - 22224390
CAACAAGGACACUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU
...((..(((.(((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....))))).)))...))..... ( -23.84)
>DroSec_CAF1 9588 102 - 1
CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU
...((..(((((((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....)))))))))...))..... ( -28.74)
>DroSim_CAF1 10734 102 - 1
CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU
...((..(((((((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....)))))))))...))..... ( -28.74)
>DroEre_CAF1 11554 102 - 1
CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGCGAAGCAAGUCGGAGUCAGAUGGAGAU
...((..(((((((((.....(((((((..((((((........(((.(((...))))))......)))))))))))))....)))))))))...))..... ( -32.64)
>DroYak_CAF1 9860 102 - 1
CAACAUGGACGCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCACGCUGAGCGGGACAGGCGGAGCGAUUGCGAAGCAAGUCGUAGUCAGAUGGAGAU
...(((.(((..((((.....(((((((..((((((........(((.(((...))))))......)))))))))))))....))))..)))..)))..... ( -27.94)
>consensus
CAACAAGGACUCUGGCAAUAAUUCGUAAAUUUGCUCAAAUAAAUUCCAUGCUGAGCGGGACAGGCGGAGCGAUUGGGAAGCAAGUCGGAGUCAGAUGGAGAU
...((..(((((((((.....(((.(((..((((((........(((.(((...))))))......))))))))).)))....)))))))))...))..... (-25.68 = -26.12 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:22 2006