Locus 4489

Sequence ID X_DroMel_CAF1
Location 11,876,262 – 11,876,364
Length 102
Max. P 0.660935
window7379

overview

Window 9

Location 11,876,262 – 11,876,364
Length 102
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -27.92
Consensus MFE -17.13
Energy contribution -17.72
Covariance contribution 0.59
Combinations/Pair 1.30
Mean z-score -1.64
Structure conservation index 0.61
SVM decision value 0.27
SVM RNA-class probability 0.660935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11876262 102 + 22224390
UCAUCGGGUAGGUGGAAUUCGUUCCAC-GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCCGC---
....(((((((((((((.........(-(((((...((....))...)--))-)))....((((..((........))..))))......))))))))..))))).--- ( -28.30)
>DroSec_CAF1 9444 104 + 1
UCAACGGGUAGGUGGAAUUCGUUCCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCCGCAGC
....(((((((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))..))))).... ( -29.40)
>DroSim_CAF1 10590 104 + 1
UCAUCGGGUAGGUGGAAUUCGUUCCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCCGCAGC
....(((((((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))..))))).... ( -29.00)
>DroEre_CAF1 11428 99 + 1
UCGUCGGCUAGGUGGAAUCCGUUCCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCACCU-----
.....((..((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))))....----- ( -25.70)
>DroYak_CAF1 9734 99 + 1
UCGUUGGGUAGGUGGAAUCCGUACCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCUAUCUCCAUCU-----
......((.((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))))....----- ( -25.00)
>DroMoj_CAF1 27091 87 + 1
UCUG-----UGCUGUAGCCAGCCCCAUUGGGGACUUUGCAUACAUUUUGCCCACUGGCCUGGCUUGGGCGA-AUAUUUUAGGCUCUCGCACUU----------------
...(-----(((...((((((((((...)))).))..........((((((((..(((...))))))))))-).......))))...))))..---------------- ( -30.10)
>consensus
UCAUCGGGUAGGUGGAAUCCGUUCCA__GGGGGCUUUGCAUACAUUUU__CC_CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCC_____
.....((((((((((((...(((((....)))))..........................((((..((........))..))))......))))))))..))))..... (-17.13 = -17.72 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:21 2006