Locus 4485

Sequence ID X_DroMel_CAF1
Location 11,873,004 – 11,873,094
Length 90
Max. P 0.577627
window7372

overview

Window 2

Location 11,873,004 – 11,873,094
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 88.96
Mean single sequence MFE -17.07
Consensus MFE -14.88
Energy contribution -14.93
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.87
SVM decision value 0.09
SVM RNA-class probability 0.577627
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11873004 90 + 22224390
AUGCCUCGGCUUGCAGUAAUUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
..((....))..((((((((..............((((((.....(((((((((((....)))))))))))))))))...)))).)))). ( -17.73)
>DroSec_CAF1 6222 90 + 1
AUGCCUCGGCUUGCAGCUUAUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
..((....))..((((..............((..((((((.....(((((((((((....)))))))))))))))))..))....)))). ( -16.57)
>DroSim_CAF1 6195 90 + 1
AUGCCUCGGCUUGCAGCUUUUCUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
..((....))..((((..............((..((((((.....(((((((((((....)))))))))))))))))..))....)))). ( -16.57)
>DroEre_CAF1 8059 90 + 1
AUGCCUCGGCUUGCGACGCUCUCCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
..((.(((.....))).))...........((..((((((.....(((((((((((....)))))))))))))))))..))......... ( -18.70)
>DroYak_CAF1 6341 90 + 1
AUGCCUCGGCUUGCAGCGCUUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGUUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
..((....))..((((..............((..((((((.....(((((((((((....)))))))))))))))))..))....)))). ( -16.57)
>DroAna_CAF1 8050 81 + 1
GCAUGUCGACUUGCC---------CUUUUUAAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
(((........))).---------.....((((.((((((.....(((((((((((....)))))))))))))))))...))))...... ( -16.30)
>consensus
AUGCCUCGGCUUGCAGCGCUUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC
..((....))....................((..((((((.....(((((((((((....)))))))))))))))))..))......... (-14.88 = -14.93 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:15 2006