Locus 4483

Sequence ID X_DroMel_CAF1
Location 11,864,607 – 11,864,711
Length 104
Max. P 0.594214
window7369

overview

Window 9

Location 11,864,607 – 11,864,711
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 84.17
Mean single sequence MFE -36.76
Consensus MFE -28.63
Energy contribution -28.05
Covariance contribution -0.58
Combinations/Pair 1.39
Mean z-score -1.73
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.594214
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11864607 104 + 22224390
UUGAAGAGAAGCUUGCUGCUCAAAUGGAAUGCCUGGAUGAUGGGCGAAUGAUCCACGGACUGGGUGUCCAAUUGGGCGCCCAUUGAGGUGUCUGGAAUGGGUGG
...............(..((((..((((.(((((((((.((......)).))))......(((((((((....)))))))))...)))))))))...))))..) ( -35.40)
>DroSec_CAF1 888 104 + 1
UGGAAGAGGAGCUUGCUGCUCAGAUGAAAUGCCUGGAUGAUUGGCGAGUGAUCCACGGACUGGGUGUUCAAUUGAGCGCCCAUUGAGGUGUCUGGAAUGGGUGG
.....(((.((....)).))).........((((((((.(((....))).)))).((((((((((((((....))))))))).......)))))....)))).. ( -35.51)
>DroSim_CAF1 891 104 + 1
UUGAAGAGGAGCUUGCUGCUCAGAUGGAAUGCCUGGAUGAUGGGCGAGUGAUCCACGGACUGGGUGCCCAAUUGGGUGCCCAUUGAGGUGUCUGGAAUGGGUGG
..........(((((((..(((..(((.....)))..)))..))))))).((((((((((((((..(((....)))..)))).......)))))...))))).. ( -37.41)
>DroEre_CAF1 7742 104 + 1
UUGAAGAGGAGCUUACUGCUCAGAUGGAAUGCAGCGAUGAUGGGCGAGUGAUCUACGGACUGGGUGUCCAAUUGGGCGCCCAUGGAGGUGUCUGAAAUGGGUAG
...............(((((((..((((.(((.((........))..))).))))((((((((((((((....))))))))).......)))))...))))))) ( -33.21)
>DroYak_CAF1 901 104 + 1
UUGAAGAGGAGCUUACUGCUCAGAUGGAAUGCCUUGAUGAUGGGCGAGUGCUCCACGGACUGGGUGUCCAAUUGGGCGCCCAUGGAGGUGUCUAAAAUCGAUCA
........((((.....)))).(((.((.(((((.......)))))....(((((.....(((((((((....))))))))))))))..........)).))). ( -39.00)
>DroAna_CAF1 2374 104 + 1
UUGAAGAGCAGCUCACUGCUGCGGUGGAAGGCCAGGACUACGGGUGAGUGAUCCUGGGACUGGGUGUUCAGCUGGGCACCCAUGGAGGUCUCUGUAGGAGUUUA
.....(((...)))(((.((((((.(((...((((((.(((......))).))))))...(((((((((....)))))))))......))))))))).)))... ( -40.00)
>consensus
UUGAAGAGGAGCUUACUGCUCAGAUGGAAUGCCUGGAUGAUGGGCGAGUGAUCCACGGACUGGGUGUCCAAUUGGGCGCCCAUGGAGGUGUCUGGAAUGGGUGG
........((((.....))))...((((.(((((((((.((......)).))))).....(((((((((....)))))))))....)))))))).......... (-28.63 = -28.05 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:12 2006