Locus 4482

Sequence ID X_DroMel_CAF1
Location 11,862,929 – 11,863,049
Length 120
Max. P 0.637095
window7368

overview

Window 8

Location 11,862,929 – 11,863,049
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -40.90
Consensus MFE -32.72
Energy contribution -32.48
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -1.60
Structure conservation index 0.80
SVM decision value 0.21
SVM RNA-class probability 0.637095
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11862929 120 + 22224390
CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCCGCUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG
...(((((((((((.....)))).((((((......))..((((((((........))))))))....))))...)))))))(((((((......(((....)))......))))))).. ( -43.70)
>DroSec_CAF1 13332 112 + 1
CACAUACA--------CUCGUGCAGCUGUCAAAAUCGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCUACUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG
........--------.((((.(.((((((...((((...))))...))))))....((((((((((.......)))((((((.....)))))).....))))))).....).))))... ( -33.10)
>DroSim_CAF1 13312 120 + 1
CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCUGCUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG
.....((((((((((((...(((.((..((......))..((((((((........))))))))..))..)))..)))))))))))).....((.....))...((..(....)..)).. ( -43.50)
>DroYak_CAF1 12848 120 + 1
CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCACAUGUUAUCAGUGCCAGCAACGCUGCGUGCUGCUCAUCUGACUAUCGAUAGUAACCAGGGCGAAAG
.....((((((((((((...(((.(((((................))))).((((.((....))))))..)))..))))))))))))((.((((((((....))))...))))..))... ( -43.29)
>consensus
CACAUGCAGCGCGCAGCUCGUGCAGCUGUCAAAAACGAAACGAUAACGGCAGCAUAUGUUAUCGGCGCCAGCAACGCUGCGUGCUGCUCACGCGACUAUCGAUAGCUACCAGGGCGGCAG
...............((((....(((((((...........(((((((........)))))))(((((((((...)))).)))))...............)))))))....))))..... (-32.72 = -32.48 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:11 2006