Locus 448

Sequence ID X_DroMel_CAF1
Location 1,327,806 – 1,327,912
Length 106
Max. P 0.518332
window688

overview

Window 8

Location 1,327,806 – 1,327,912
Length 106
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 76.07
Mean single sequence MFE -34.30
Consensus MFE -22.77
Energy contribution -22.88
Covariance contribution 0.11
Combinations/Pair 1.17
Mean z-score -1.07
Structure conservation index 0.66
SVM decision value -0.03
SVM RNA-class probability 0.518332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1327806 106 - 22224390
GGCCC------GCAUGCUUGAGUGCGUCACUUACUGGUGGCCCGCGGAUAGUCGCCCUUUUCGACGCCCGAGUCCGUGGUGUCCUGCGACUGCUGCUUGUUAAGUUCGCGCA
....(------((..((((((..(.((((((....)))))).)((((.(((((((.......((((((((....)).))))))..)))))))))))...))))))..))).. ( -40.80)
>DroVir_CAF1 11021 107 - 1
-----CGGUAAACAACAUUGGCUGCGUCACUCACUUGUCGCACGAGGGUAGUCGCCCUUUUCCACACCCGUGUCGGUAGUGUCCUGCGACUGCUGUUUGCCCAAAUUACGCA
-----.(((((((....((.(.((((.((......)).))))).))(((((((((.......((((((......))).)))....))))))))))))))))........... ( -33.30)
>DroPse_CAF1 3097 101 - 1
G-----------CCAUUGCGUCUGCGUCACUCACUUGUGGCACGCGGAUAGUCGCCUUUCUCGAUGCCCCCAUCUGUAGUGUCCUGCGACUGCUGUUUGUUUAGUUCACGCA
.-----------....(((((..(((((((......)))))..((((.(((((((....(((((((....)))).).))......))))))))))).......))..))))) ( -29.90)
>DroEre_CAF1 3117 106 - 1
AACCC------GCAUGCUCGAGUGCGUCACUUACUGGUGGCCCGCGGGUAGUCGCCCUUCUCGACUCCCGAGUCUGUGGUGUCCUGCGACUGCUGCUUGUUAAGUUCGCGCA
.((((------(((.((((..(((.((((((....)))))).)))(((.(((((.......)))))))))))).))))).))...(((...(((........)))...))). ( -42.40)
>DroWil_CAF1 534 98 - 1
--------------AUCUCAUCUGUGUCACUCACUUGUGGCUCGCGGAUAGUCGCCCUUCUCCACGCUGUUGUCAGUGGUGUCCUGCGACUGCUGCUUGUUCAAUUCACGCA
--------------.........(.(((((......))))).)((((.(((((((....(.((((..........)))).)....)))))))))))................ ( -29.50)
>DroPer_CAF1 2874 101 - 1
G-----------CCAUUGCGUCUGCGUCACUCACUUGUGGCACGCGGAUAGUCGCCUUUCUCGAUGCCCCCAUCUGUAGUGUCCUGCGACUGCUGUUUGUUUAGUUCACGCA
.-----------....(((((..(((((((......)))))..((((.(((((((....(((((((....)))).).))......))))))))))).......))..))))) ( -29.90)
>consensus
G___________CAAUCUCGUCUGCGUCACUCACUUGUGGCACGCGGAUAGUCGCCCUUCUCGACGCCCGAGUCUGUAGUGUCCUGCGACUGCUGCUUGUUAAGUUCACGCA
......................((((((((......)))))..((((.(((((((.......(((((...........)))))..))))))))))).............))) (-22.77 = -22.88 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:48 2006