Locus 4478

Sequence ID X_DroMel_CAF1
Location 11,850,552 – 11,850,668
Length 116
Max. P 0.697594
window7363

overview

Window 3

Location 11,850,552 – 11,850,668
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.66
Mean single sequence MFE -42.12
Consensus MFE -30.56
Energy contribution -29.12
Covariance contribution -1.44
Combinations/Pair 1.41
Mean z-score -1.62
Structure conservation index 0.73
SVM decision value 0.34
SVM RNA-class probability 0.697594
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11850552 116 - 22224390
----AACUACUCACUUGGGAUUAACCUUGUAGAUGGUGGCGCCAUUGAAGGUGGCCACAUACAGGUUGCCCUCGGUAUCGAUGGUCAGGCCAUCGGGCAGCAGAUGAUCCUUGGGACUAU
----.....((((...(((((((...(((((....((((((((......))).))))).)))))(((((((..(....)(((((.....))))))))))))...)))))))))))..... ( -44.50)
>DroVir_CAF1 4577 115 - 1
-----UUAACAUACCUUGGAUUGACCUUGUAGAUGGUGGCGCCAUUGAAUGUGGCCACAUAGAUGUUGCCCUCGGUAUCAAUGGUCAUGCCAUCGGGCAGGAUAUGAUCCUUGGGACUGG
-----....((..((..((((((..(((((...(((((((((((((((.((.(((.(((....))).)))..))...))))))))...))))))).)))))...))))))..))...)). ( -41.50)
>DroPse_CAF1 614 119 - 1
CGC-AGGGACUUACUUUGGGUUAACCUUGAAGAUGGUGGCACCGUUAAAUGUGGCCACAUAGAGAUUACCCUCGGUGUCGAUGGUUAGACCGUCGGGCAGCAGAUGAUCCUUGGGGCUGG
(.(-(((((........((((((.((........)))))).)).(((..(((.(((((((.(((......))).))))((((((.....))))))))).)))..))))))))).)..... ( -37.90)
>DroGri_CAF1 4611 115 - 1
-----UUGGGAUACCUUGGGUUAACUUUGUAGAUGGUGGCGCCAUUGAAUGUGGCCACAUACAGAUUGCCCUCGGUGUCAAUGGUCAUGCCAUCGGGCAGUAGAUGAUCCUUGGGACUGG
-----(..(....((..((((((.((((((...(((((((((((((((.((.(((............)))..))...))))))))...))))))).)))).)).))))))..))..)..) ( -39.10)
>DroMoj_CAF1 7634 115 - 1
-----UUAACGUACUUGGGAUUGACUUUGUAGAUGGUGGAGCCAUUGAAUGUGGCCACAUAGAGGUUGCCCUCGGUGUCAAUGGUCAUGCCAUCGGGCAAGAUGUGAGUCUUGGGGCUGU
-----...(((..((..(((((.(((((((.(((((((..((((((((.((((....))))((((....))))....))))))))..)))))))..)))))..)).)))))..))..))) ( -45.60)
>DroAna_CAF1 5518 118 - 1
--CAGGAUACUCACUUGGGAUUCACCUUGUAGAUGGUGGCGCCGUUGAAGGUGGCCACGUAGAGAUUGCCCUCGGUGUCGAUGGUGAGGCCGUCGGGCAGGAGAUGGUCCUUGGGACUGG
--.(((((.(((((.(((...(((((((...(((((.....))))).)))))))))).)).))).((((((.((((.(((....))).))))..))))))......)))))......... ( -44.10)
>consensus
_____UUAACUUACUUGGGAUUAACCUUGUAGAUGGUGGCGCCAUUGAAUGUGGCCACAUAGAGAUUGCCCUCGGUGUCAAUGGUCAGGCCAUCGGGCAGGAGAUGAUCCUUGGGACUGG
.............((..((((((...((((.((((((...((((((((.((((....)))).....((((...))))))))))))...))))))..))))....))))))..))...... (-30.56 = -29.12 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:06 2006