| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,845,800 – 11,845,895 |
| Length | 95 |
| Max. P | 0.657000 |
| Location | 11,845,800 – 11,845,895 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.60 |
| Mean single sequence MFE | -34.45 |
| Consensus MFE | -24.88 |
| Energy contribution | -25.38 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11845800 95 + 22224390 AGCGGCGAAUUGGAGGGCGGCAGUGGAUCCUCCGGAUUUGGCGGUCUCCUGGACGCCUUCUUUUUGCCAGCUAGAACAG-AAAUG-UGAAUUAAUUG (((((((((..((((((((.(((..((.((.(((....))).))))..)))..)))))))).)))))).)))...(((.-...))-).......... ( -38.70) >DroSec_CAF1 1750 95 + 1 AGCGGCGAAUUGGAGGGCGGCAGUGGAUCCUCCGGGUUUGGCGGUCUCCUUGUCGUCUUCCUUGUGCCAGCUAGAAGAG-AAAUG-UGGGUUAAUUG (((((((....((((((((((((.(((.((.(((....))).))..)))))))))))))))...)))).))).......-.....-........... ( -36.20) >DroSim_CAF1 1751 95 + 1 AGCAGCGAAUUGGAGGGUGGCAGUUGAUCCUCCGGGUUUGGCGGUCUCCUGGACGCCUUCCGUGUGCCAGCUGGAAGAG-AAAUG-UGGGUUAAUUG (((.(((...(((((((((.(((..((.((.(((....))).))))..)))..)))))))))..)))..))).......-.....-........... ( -30.00) >DroEre_CAF1 1869 95 + 1 AGCGGCGAGUUGGAGGGCGGCAGUGGAUCCUCCGGAUUUGGUGGUCUUCUGGACGCCUUCUUGGUGCCAGCUAGAACAG-AAAUG-UGGGGUAAUUG ...((((....((((((((.(((.(((.((.(((....))).))))).)))..))))))))...)))).(((...(((.-...))-)..)))..... ( -37.40) >DroYak_CAF1 1853 96 + 1 AGCGGCGAGUUGGAGGGCGGCAAUGGAUCCUCCGGAUUUGGCGGUCUCCUGGACGCUUUCCUUGUGCCAGCUAAAAUCGAAAAUA-UGGUGUAAUUG (((((((....((((((((.(...(((.((.(((....))).))..)))..).))))))))...)))).))).............-........... ( -30.20) >DroMoj_CAF1 2206 93 + 1 AGCGGGGAACUGGAGGGCGGCAGGGGUUCCUCAGGGUCUGGUGGAGUUCUCGCUGCAUUUCGUUUGCCUGCC---AUAG-AAAUGAUGAACUAUUUG .(((((.((.(((((.(((((..(..((((((((...)))).))))..)..))))).))))).)).))))).---....-................. ( -34.20) >consensus AGCGGCGAAUUGGAGGGCGGCAGUGGAUCCUCCGGAUUUGGCGGUCUCCUGGACGCCUUCCUUGUGCCAGCUAGAACAG_AAAUG_UGGGUUAAUUG (((((((....((((((((.(((.(((.((.(((....))).))))).)))..))))))))...)))).)))......................... (-24.88 = -25.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:00 2006