Locus 4473

Sequence ID X_DroMel_CAF1
Location 11,836,106 – 11,836,201
Length 95
Max. P 0.641894
window7352

overview

Window 2

Location 11,836,106 – 11,836,201
Length 95
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 88.44
Mean single sequence MFE -18.33
Consensus MFE -14.64
Energy contribution -14.20
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -2.07
Structure conservation index 0.80
SVM decision value 0.22
SVM RNA-class probability 0.641894
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11836106 95 - 22224390
ACCCCAACUGAAAACAACAAAAGCU-----AAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGGCAGCCAACGAACGGCAUCGGGCAUUAUAAUCAUCAACU
..(((................((((-----...(((....)))...)))).(((((..(((........)))..))))).)))................. ( -17.90)
>DroSec_CAF1 11902 94 - 1
ACCCCAACUGA-AACAACAAAAGCU-----AAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGUCAGCCAACGAACGGCAUCGGGCAUUAUAAUCAUCAACU
..(((......-.........((((-----...(((....)))...)))).(((((..((((......))))..))))).)))................. ( -18.10)
>DroEre_CAF1 13142 94 - 1
ACAACAACUGA-AACAACAG-AGUUGAAGCAAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGGCAGCCAA----CGGCAUCGGGCAUUAUAAUCAUCGACU
.......(((.-.....)))-(((((((((...))).....(((...((..((....))..)).(((..----.)))....)))..........)))))) ( -19.00)
>consensus
ACCCCAACUGA_AACAACAAAAGCU_____AAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGGCAGCCAACGAACGGCAUCGGGCAUUAUAAUCAUCAACU
........(((..........((((.......)))).....(((..(((....)))........(((.......)))....)))..........)))... (-14.64 = -14.20 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:57 2006