Locus 4472

Sequence ID X_DroMel_CAF1
Location 11,835,261 – 11,835,367
Length 106
Max. P 0.966711
window7351

overview

Window 1

Location 11,835,261 – 11,835,367
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.66
Mean single sequence MFE -25.89
Consensus MFE -22.82
Energy contribution -23.66
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.88
SVM decision value 1.60
SVM RNA-class probability 0.966711
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11835261 106 - 22224390
AUACAAAGUCCAUAAUAAUGAUCUUUCAGUUAAUGGGUUGAUUUCAAUUAGAGUUUGGGCAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCCGU
.................(((.((((.((((...((((.((.((((................)))))).))))...)))).))))))).....(((....))).... ( -21.39)
>DroSec_CAF1 11100 106 - 1
AUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCUGU
...........((((..(((.(((..((((...(((((((.((((................)))))))))))...))))..)))))).....(((....))))))) ( -29.59)
>DroSim_CAF1 11569 106 - 1
AUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCUGU
...........((((..(((.(((..((((...(((((((.((((................)))))))))))...))))..)))))).....(((....))))))) ( -29.59)
>DroEre_CAF1 12281 101 - 1
UU-----AUCCAUAGUAAUGAUUCUGCAGUUGAUGCGGUGAUUUCAAUUGGAGUUUGGGAAGAGACAUCCAAAUUGCUGUAAGACAUAAAUUGCCUUAUGGCCUGU
..-----.((((.......(((((((((.....))))).)))).....))))(((((((........))))))).((((((((.((.....)).)))))))).... ( -23.70)
>DroYak_CAF1 10915 106 - 1
AUACGAAAUCCAUAAUAAUGAUCUUGCAGUUGAUGGGGUGAUUUCAAUUAAAGUUUGGGAAAAGACAUCCAAAUUACUGUAAGACAUAAAUUGCCUUAUGGCCUGU
.................(((.(((((((((.....(((((.(..(((.......)))..).....))))).....)))))))))))).....(((....))).... ( -25.20)
>consensus
AUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCUGU
.................(((.(((((((((...(((((((.((((((.......)))))).....)))))))...)))))))))))).....(((....))).... (-22.82 = -23.66 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:56 2006