Locus 4470

Sequence ID X_DroMel_CAF1
Location 11,830,097 – 11,830,187
Length 90
Max. P 0.665743
window7348

overview

Window 8

Location 11,830,097 – 11,830,187
Length 90
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 76.64
Mean single sequence MFE -32.29
Consensus MFE -24.01
Energy contribution -24.98
Covariance contribution 0.98
Combinations/Pair 1.26
Mean z-score -0.97
Structure conservation index 0.74
SVM decision value 0.28
SVM RNA-class probability 0.665743
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11830097 90 - 22224390
-----------------------UCCUUGAACUCUCACGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGAUCCAUCCACAUGUCGGAGGAGCGGACUAGCUUC
-----------------------..............(((((.......)))))((((((((((.((((....)))).).(((.(((.......))))))))))))).))... ( -28.70)
>DroGri_CAF1 4755 93 - 1
--------------------AAAAGUUUGCUUUAUUCAAAAGAUGUGGACUGUGGACCAUUGCCGGAAUUGAAAUUUGGUUCGAUACAUCUGUCCGAGGAGCGCACCAGCUAU
--------------------....((.((((((.......(((((((.....(((((((.................))))))).)))))))......)))))).))....... ( -20.15)
>DroSec_CAF1 6046 97 - 1
----------------AUCGAAAUCCUUGAACUCUCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGUUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC
----------------.(((...(((.....(((..(((.(.(((((((....(((.....)))(((((..(...)..))))).))))))).))))..))).))))))..... ( -36.10)
>DroSim_CAF1 6000 97 - 1
----------------AUCGAAAUCCUUGAACUCUCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGCUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC
----------------.(((...(((.....(((..(((.(.(((((((....(((.....)))(((((..(...)..))))).))))))).))))..))).))))))..... ( -38.50)
>DroEre_CAF1 7423 113 - 1
UUUGAUUGCUUCUCACAACGAAAUCCUUGAAUUCCCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUCGGAUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC
((((.(((((((((.(((.(....).)))........((.(.(((((((....(((.....)))(((.(((.....))).))).))))))).)))))))))))).)))).... ( -37.40)
>DroYak_CAF1 5889 85 - 1
--------------------------UU--AAUCUUCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGCUCCAUUCACAUGUCCGAGGAGCGGACGAGCUUC
--------------------------..--..((.(((((..(((((((....(((.....)))(((((..(...)..))))).))))))).((....))))))).))..... ( -32.90)
>consensus
____________________AAAUCCUUGAACUCUCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGAUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC
....................................(((.(.(((((((....(((.....)))((((((((...)))))))).))))))).)))).(((((......))))) (-24.01 = -24.98 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:54 2006