Locus 4468

Sequence ID X_DroMel_CAF1
Location 11,823,111 – 11,823,220
Length 109
Max. P 0.999396
window7342

overview

Window 2

Location 11,823,111 – 11,823,220
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 79.02
Mean single sequence MFE -13.47
Consensus MFE -13.93
Energy contribution -13.60
Covariance contribution -0.33
Combinations/Pair 1.16
Mean z-score -0.72
Structure conservation index 1.03
SVM decision value 3.57
SVM RNA-class probability 0.999396
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11823111 109 + 22224390
CUAGGAUUAAACACGCAAACAUUACCUGUAUUAUUGACUAAUACGAACCGUUAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCAUUGGUUGGCUAAAACAAAAU
..........................(((((((.....)))))))...............((((((((((...((.........))...)))))))))).......... ( -14.10)
>DroSec_CAF1 8366 87 + 1
----------------------UACCUAUAUUAUUGACUAAUAUGAACCGCCAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCACUGCUUGGCUGACGCAAAAC
----------------------....(((((((.....)))))))...............((((((.(((...((.........))...))).)))))).......... ( -11.20)
>DroSim_CAF1 9036 87 + 1
----------------------UACCUGUAUUAUUGACUAAUAUGAACCGCCAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCACUGGUUGGCUGACGCAAAAC
----------------------....(((............((((......)))).....((((((((((...((.........))...))))))))))...))).... ( -15.10)
>consensus
______________________UACCUGUAUUAUUGACUAAUAUGAACCGCCAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCACUGGUUGGCUGACGCAAAAC
..........................(((((((.....)))))))...............((((((((((...((.........))...)))))))))).......... (-13.93 = -13.60 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:49 2006