Locus 4467

Sequence ID X_DroMel_CAF1
Location 11,822,239 – 11,822,359
Length 120
Max. P 0.633296
window7341

overview

Window 1

Location 11,822,239 – 11,822,359
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.17
Mean single sequence MFE -45.42
Consensus MFE -43.92
Energy contribution -43.88
Covariance contribution -0.04
Combinations/Pair 1.03
Mean z-score -1.13
Structure conservation index 0.97
SVM decision value 0.21
SVM RNA-class probability 0.633296
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11822239 120 - 22224390
ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUAUGGAAUCAACGAGAGUCGCUGCC
.........((((((.((((....))))...........(((.(((.((((((((..(..(((((.......)))))(((((...)))))....)..)))))))).))).))).)))))) ( -45.30)
>DroSec_CAF1 7523 120 - 1
ACAAGUGCCGGCAGCAAUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUACGGAAUCAACGAGAGUCGCUGCC
.........((((((.((((....))))...........(((.(((.(((((((......(((((.......)))))(((((...)))))........))))))).))).))).)))))) ( -44.30)
>DroSim_CAF1 8180 120 - 1
ACAAGUGCCGGCAGCAAUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUACGGAAUCAACGAGAGUCGCUGCC
.........((((((.((((....))))...........(((.(((.(((((((......(((((.......)))))(((((...)))))........))))))).))).))).)))))) ( -44.30)
>DroEre_CAF1 3557 120 - 1
ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGCGCCAGUAGCUAUCGCUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGUCUCAACUACGGCAUCAACGAGAGUCGCUGCC
...(((((((((....((((....))))..((((..(((((..((((((....)).).)))..)))))..))))))))))((((....)))).)))..((((.(.((....)).).)))) ( -47.00)
>DroYak_CAF1 7623 120 - 1
ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGCGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAACUACGGAAUCAACGAGAGUCGCUGCC
......((.(((.((.((((....))))..)))))((..(((.(((.(((((((......(((((.......)))))(((((...)))))........))))))).))).)))..)))). ( -46.20)
>consensus
ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUACGGAAUCAACGAGAGUCGCUGCC
.........((((((.((((....))))...........(((.(((.(((((((.(((((.((.......)).)))))..(((......)))......))))))).))).))).)))))) (-43.92 = -43.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:48 2006