Locus 4463

Sequence ID X_DroMel_CAF1
Location 11,811,385 – 11,811,503
Length 118
Max. P 0.678115
window7334

overview

Window 4

Location 11,811,385 – 11,811,503
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.40
Mean single sequence MFE -30.33
Consensus MFE -28.90
Energy contribution -28.23
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -0.87
Structure conservation index 0.95
SVM decision value 0.30
SVM RNA-class probability 0.678115
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11811385 118 - 22224390
-ACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUUCC-U
-..........(((((.((....))....((((((.(.((((.(((((((....)))))........)).)))).)))))))........))))).((((((.((....)).))))))-. ( -30.10)
>DroVir_CAF1 21954 118 - 1
-ACAGAUUCAUGACACAGUACCCACAAAUGGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCAU-A
-....(((((((((((.((....))....((((((.(.((((.(((((((....)))))........)).)))).)))))))........))))).((....))..))))))......-. ( -29.70)
>DroGri_CAF1 19206 119 - 1
-ACAGAUUCAUGACACAGUACCCACAAAUGGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCCUUA
-....(((((((((((.((....))....((((((.(.((((.(((((((....)))))........)).)))).)))))))........))))).((....))..))))))........ ( -29.70)
>DroWil_CAF1 18783 118 - 1
-ACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGUUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUACU-A
-....(((((((((((.((....))....((((((..(((....)))...(((((...(((...)))..)))))..))))))........))))).((....))..))))))......-. ( -29.90)
>DroMoj_CAF1 18424 118 - 1
-ACAGAUUCAUGACACAGUACCCACAAAUGGGGCCCGAGGUAGAUCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCAU-A
-....(((((((((((....((((....))))((.((((.....((((((....))))))....)))).))((....))...........))))).((....))..))))))......-. ( -30.50)
>DroAna_CAF1 14788 119 - 1
AACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCCUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUUAU-A
(((..(((((((((((.((....))...(((((.(((.((((.(((((((....)))))........)).)))).))).)))))......))))).((....))..)))))).)))..-. ( -32.10)
>consensus
_ACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCAU_A
.....(((((((((((.((....))...(((((.(((.((((.(((((((....)))))........)).)))).))).)))))......))))).((....))..))))))........ (-28.90 = -28.23 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:41 2006