Locus 4458

Sequence ID X_DroMel_CAF1
Location 11,797,997 – 11,798,117
Length 120
Max. P 0.983692
window7325

overview

Window 5

Location 11,797,997 – 11,798,117
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -27.98
Consensus MFE -25.17
Energy contribution -25.25
Covariance contribution 0.09
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.90
SVM decision value 1.95
SVM RNA-class probability 0.983692
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11797997 120 - 22224390
UAUAUUGUGUAUUUUAUUGUAUUUCCGUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUUACGUUUCAAGAGCAAGGCGAAGCUGAGUUACAAGAUGGCGAAAUUGACAAAAAU
....((((..((((..(..(.......(((..(((((((..(((....)))(((((((.............))))).))..)))))))..))).......)..)..))))..)))).... ( -24.26)
>DroVir_CAF1 4384 120 - 1
UAUAUAGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUCGCCUUGAUAAUUAUUACAUUUCAAGAGCAAGGCGAAGCUGAAUUACAAGACGGUGAAAUUGACAAAAAU
......((..((((((((((......((((..(((((((.((......)).(((((((.............))))).))..)))))))..))))......))))))))))..))...... ( -27.22)
>DroWil_CAF1 3260 120 - 1
UAUAUUGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUAAUCAUAACAUUUCAAGAGCAAGGCGAAGCUGAAUUGCAAGAUGGUGAAAUUGACAAGAAU
....((((..(((((((..(.((.(.((((..(((((((..(((....)))(((((((.............))))).))..)))))))..)))).).)).)..)))))))..)))).... ( -28.82)
>DroMoj_CAF1 2881 120 - 1
UAUAUAGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUCGCCUUGAUUAUCAUAACAUUUCAAGAGCAAGGCGAAGCUGAAUUGCAAGAUGGUGAAAUUGACAAAAAU
......((..(((((((..(.((.(.((((..(((((((.((......)).(((((((.............))))).))..)))))))..)))).).)).)..)))))))..))...... ( -25.62)
>DroAna_CAF1 2100 120 - 1
UAUAUUGUGUAUUUUAUUGUGUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUUACGUUUCAAGAGCAAGGCGAAGCCGAGCUACAAGACGGUGAAAUUGACAAAAAU
....((((..((((((((((.((....(((..(((((((..(((....)))(((((((.............))))).))..)))))))..)))....)).))))))))))..)))).... ( -29.12)
>DroPer_CAF1 4 120 - 1
UAUAUUGUCUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUCACAUUUCAAGAGCAAGGCGAAGCUGAGUUACAAGAUGGUGAAAUUGACAAGAAC
....(((((.(((((((..(......((((..(((((((..(((....)))(((((((.............))))).))..)))))))..))))......)..))))))).))))).... ( -32.82)
>consensus
UAUAUUGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUUACAUUUCAAGAGCAAGGCGAAGCUGAAUUACAAGAUGGUGAAAUUGACAAAAAU
....((((..((((((((((......((((..(((((((.((......)).(((((((.............))))).))..)))))))..))))......))))))))))..)))).... (-25.17 = -25.25 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:32 2006