Locus 4454

Sequence ID X_DroMel_CAF1
Location 11,784,488 – 11,784,593
Length 105
Max. P 0.907232
window7316 window7317

overview

Window 6

Location 11,784,488 – 11,784,593
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 88.75
Mean single sequence MFE -34.57
Consensus MFE -26.50
Energy contribution -26.67
Covariance contribution 0.17
Combinations/Pair 1.06
Mean z-score -4.90
Structure conservation index 0.77
SVM decision value 1.05
SVM RNA-class probability 0.907232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11784488 105 + 22224390
CAUAUUGCUAUACAUAUAUCUCAGGGAUUGCAAGGAUUGCAUAGUACGAGAUACAUACUGUCGCAGUUAUGCAGCUUGUUUAAUUACCCUGAAAUAUAUGGCUUU
............(((((((.((((((.(((((..((((((((((((.(.....).)))))).)))))).)))))..((......)))))))).)))))))..... ( -30.10)
>DroSec_CAF1 14359 101 + 1
CAUAUUGCUAU----AUAUCUCAGGGAUCGGAAGGAUUGCAUAGUACGAGAUACAUACUAUCGCAGCUAUGCAGCUUGUUCAAUUACCCUGAAAUAUAUGGCUUU
......(((((----((((.((((((....(((.(((((((((((....((((.....))))...))))))))).)).))).....)))))).)))))))))... ( -38.20)
>DroSim_CAF1 14442 92 + 1
CAUAUUGCUAU----AUAUCUCAGGGAUCGCAAGGAUUGCAUAGUACGAGA---------UCGCAGCUAUGCAGCUUGUUCAAUUACCCUGAAAUAUAUGGCUUU
......(((((----((((.((((((...(((((..(((((((((.((...---------.))..)))))))))))))).......)))))).)))))))))... ( -35.40)
>consensus
CAUAUUGCUAU____AUAUCUCAGGGAUCGCAAGGAUUGCAUAGUACGAGAUACAUACU_UCGCAGCUAUGCAGCUUGUUCAAUUACCCUGAAAUAUAUGGCUUU
......(((((....((((.((((((...(((((..(((((((((....((((.....))))...)))))))))))))).......)))))).)))))))))... (-26.50 = -26.67 +   0.17)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 11,784,488 – 11,784,593
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 88.75
Mean single sequence MFE -34.70
Consensus MFE -27.22
Energy contribution -28.00
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -5.49
Structure conservation index 0.78
SVM decision value 0.86
SVM RNA-class probability 0.869746
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11784488 105 - 22224390
AAAGCCAUAUAUUUCAGGGUAAUUAAACAAGCUGCAUAACUGCGACAGUAUGUAUCUCGUACUAUGCAAUCCUUGCAAUCCCUGAGAUAUAUGUAUAGCAAUAUG
...((((((((((((((((.......((.((.((((((.(((...))))))))).)).))....((((.....))))..))))))))))))))....))...... ( -31.30)
>DroSec_CAF1 14359 101 - 1
AAAGCCAUAUAUUUCAGGGUAAUUGAACAAGCUGCAUAGCUGCGAUAGUAUGUAUCUCGUACUAUGCAAUCCUUCCGAUCCCUGAGAUAU----AUAGCAAUAUG
...((.(((((((((((((..((((....((((....))))((.((((((((.....))))))))))........)))))))))))))))----)).))...... ( -35.30)
>DroSim_CAF1 14442 92 - 1
AAAGCCAUAUAUUUCAGGGUAAUUGAACAAGCUGCAUAGCUGCGA---------UCUCGUACUAUGCAAUCCUUGCGAUCCCUGAGAUAU----AUAGCAAUAUG
...((.(((((((((((((..((((..((((.(((((((.((((.---------...)))))))))))...)))))))))))))))))))----)).))...... ( -37.50)
>consensus
AAAGCCAUAUAUUUCAGGGUAAUUGAACAAGCUGCAUAGCUGCGA_AGUAUGUAUCUCGUACUAUGCAAUCCUUGCGAUCCCUGAGAUAU____AUAGCAAUAUG
...((.(((((((((((((..((((..((((.(((((((.(((((...........))))))))))))...)))))))))))))))))))....)).))...... (-27.22 = -28.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006