| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,784,278 – 11,784,372 |
| Length | 94 |
| Max. P | 0.835036 |
| Location | 11,784,278 – 11,784,372 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -21.48 |
| Consensus MFE | -13.63 |
| Energy contribution | -16.63 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11784278 94 - 22224390 AUAACAUCGU--------------AUCAUACCCCCGCUGUCCCCCCCCCCCCCCAUCCGUAUGUAUAUACACUUGAACAACCUGGCGCUUUCGAGUGCCCAGGUAUCU ........((--------------(((((((...........................))))).))))...........((((((((((....)))).)))))).... ( -16.93) >DroSec_CAF1 14150 99 - 1 AUAACAUCGUUCAGUUCCCGAUAUACCAUACCCCCGCCGUCCC--------CCCAUCCGUAUGUAUAUACACUUGAACAUCCUGGCGCUUUCGAGUGC-CAGGUAUCU ........((((((......((((((.((((............--------.......))))))))))....))))))..(((((((((....)))))-))))..... ( -25.81) >DroSim_CAF1 14233 99 - 1 AUAACAUCGUUCAGUUCCCGAUAUACCAUACCCCCGCCGUCCC--------CCCAUCCGUAUGUAUAUACACUUGAUCAUCCUGGCGCUUUCGAGUGC-CAGGUAUCU ........(.((((......((((((.((((............--------.......))))))))))....)))).)..(((((((((....)))))-))))..... ( -21.71) >consensus AUAACAUCGUUCAGUUCCCGAUAUACCAUACCCCCGCCGUCCC________CCCAUCCGUAUGUAUAUACACUUGAACAUCCUGGCGCUUUCGAGUGC_CAGGUAUCU ........((((((......(((((.(((((...........................))))))))))....))))))..(((((((((....))))).))))..... (-13.63 = -16.63 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:24 2006