Locus 4450

Sequence ID X_DroMel_CAF1
Location 11,779,795 – 11,779,899
Length 104
Max. P 0.955829
window7311

overview

Window 1

Location 11,779,795 – 11,779,899
Length 104
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 75.38
Mean single sequence MFE -23.46
Consensus MFE -14.84
Energy contribution -16.36
Covariance contribution 1.52
Combinations/Pair 1.26
Mean z-score -2.00
Structure conservation index 0.63
SVM decision value 1.46
SVM RNA-class probability 0.955829
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11779795 104 - 22224390
UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU-----ACAAUUUUCAAACACGAUGACAGCAGAGGACUUUUACUUUCAACGAAGGAUUGUAAAUAUGAUU
.....((((.....((((((((((((((((((.(((((((-----..........)))).)))..))..)))))))..((......)).)))))))))....))))... ( -26.00)
>DroSec_CAF1 9712 104 - 1
UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU-----ACAAUUUUCAAACACGAUGGCAGCAGAGGACUUUUACUUGAAACGAAGGAUUGUAAAUAUUAUU
..............((((((((((((((((((.(((((((-----..........)))).)))..))..)))))))((((....)))).)))))))))........... ( -26.00)
>DroSim_CAF1 9832 104 - 1
UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU-----ACAAUUUUCAAACACGAUGGCAGCAGAGGACUUUUACUUGAAACGAAGGAUUGUAAAUAUUAUU
..............((((((((((((((((((.(((((((-----..........)))).)))..))..)))))))((((....)))).)))))))))........... ( -26.00)
>DroEre_CAF1 9511 92 - 1
-----------------UCCUUCGUCCUCUGGAGCCUGUUUUCAAACGAUUUUCAAACACAAUGGCAGCUGAGGAAUUUUUCUUUGAGCGAAGGACUAUAAAUAUUAUU
-----------------((((((((((((.(..((((((((.............)))))....)))..).)))).............)))))))).............. ( -18.73)
>DroYak_CAF1 9714 83 - 1
UCUCAUAUAGCAGCCAGUCCUUCGUUCUCCGGAGUCUGUU-----ACGAUUUUCAAA---------------GGA------CUUUAAACGAAGGACUUUAAAUAUUAGU
...............(((((((((((....(((((((...-----............---------------)))------)))).)))))))))))............ ( -20.56)
>consensus
UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU_____ACAAUUUUCAAACACGAUGGCAGCAGAGGACUUUUACUUUAAACGAAGGAUUGUAAAUAUUAUU
..............((((((((((((((((...(((...........................)))...))))).............)))))))))))........... (-14.84 = -16.36 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:20 2006