Locus 445

Sequence ID X_DroMel_CAF1
Location 1,317,354 – 1,317,451
Length 97
Max. P 0.841215
window685

overview

Window 5

Location 1,317,354 – 1,317,451
Length 97
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 92.01
Mean single sequence MFE -25.76
Consensus MFE -19.64
Energy contribution -19.51
Covariance contribution -0.13
Combinations/Pair 1.10
Mean z-score -2.55
Structure conservation index 0.76
SVM decision value 0.75
SVM RNA-class probability 0.841215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1317354 97 + 22224390
UCCGCAACAGUCGUGCUCGCUGCAUUUUGCCCAAGUUAAUUAAU-CUUCCCCAAAAUUACGAGAUUUUACUUUCGCAGUUUUGCGGCGAGCAACAAAA
.............(((((((((((..((((..((((.....(((-(((............))))))..))))..))))...)))))))))))...... ( -29.60)
>DroSec_CAF1 53512 98 + 1
UCUGCAACAGUCGUGCUCGCUGCAUUUCGUCCAAGUUAAUUUAUACUUCCCCAAAAUUACGAGAUUUUACUUUCACAGUUUCGCGGCGAGCAACAAAA
.............((((((((((.........((((........))))............((((((..........))))))))))))))))...... ( -22.80)
>DroSim_CAF1 41482 98 + 1
UCUGCAACAGUCGUGCUCGCUGCAUUUCGCCCAAGUUAAUUUAUACUUCCCCAAAAUUACGAGAUUUUACUUUCACAGUUUCGCGGCGAGCAACAAAA
.............((((((((((.........((((........))))............((((((..........))))))))))))))))...... ( -22.80)
>DroEre_CAF1 51690 98 + 1
UCUGCAGCAGUCGUGCUCGCUGCAUUUCGGCCAAGUUAAUUUAUUUUUCCGCAAAACUACGAGUUUUUACUUUGGCAGUUUCGCGGCGAGCAGCAAAA
..(((.((....))(((((((((......((((((.(((...((((..............))))..))).))))))......))))))))).)))... ( -27.84)
>consensus
UCUGCAACAGUCGUGCUCGCUGCAUUUCGCCCAAGUUAAUUUAUACUUCCCCAAAAUUACGAGAUUUUACUUUCACAGUUUCGCGGCGAGCAACAAAA
.........((..((((((((((((((((..............................))))))...(((.....)))...)))))))))))).... (-19.64 = -19.51 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:45 2006