Locus 4447

Sequence ID X_DroMel_CAF1
Location 11,775,648 – 11,775,762
Length 114
Max. P 0.969854
window7308

overview

Window 8

Location 11,775,648 – 11,775,762
Length 114
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 87.54
Mean single sequence MFE -34.87
Consensus MFE -26.88
Energy contribution -26.76
Covariance contribution -0.12
Combinations/Pair 1.21
Mean z-score -2.49
Structure conservation index 0.77
SVM decision value 1.65
SVM RNA-class probability 0.969854
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11775648 114 + 22224390
UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCUACCGGAAAUCGGUGACAUUGAACGUGACAACAACAAGUGACGUGAUUAUUCAGUCUGAUUGAA--CCCAAGAUUAUCG
(((((((((((((((.......((((...(((((((..((((.....)))))))))))...)))).......))))))).(((....)))..)))))))).--............. ( -32.84)
>DroSec_CAF1 5607 114 + 1
UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCCACCGGAAGUCGGUGACAUUGAACGUGACAACUACAAGUGACGUGAUUAUUCAGUCUGAUUGAA--CCCAAAAUUAUCG
(((((((((((((((..((...((((...(((((((((..(....)..)).)))))))...))))...))..))))))).(((....)))..)))))))).--............. ( -35.40)
>DroSim_CAF1 5611 114 + 1
UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCCACCGGAAGUCGGUGACAUUGAACGUGACAACUACAAGUGACGUGAUUAUUCAGUCUGAUUGAA--CCCAAAAUUAUCG
(((((((((((((((..((...((((...(((((((((..(....)..)).)))))))...))))...))..))))))).(((....)))..)))))))).--............. ( -35.40)
>DroEre_CAF1 5462 113 + 1
UCUAUCAGGUCAUUUCCGGAUCUCACUUCCAAUGGCCGACCGGAAGUCGGUU-CAUUGAACGUGACAACCACAAGUGACGUGAUAAUCCUGUCUGAUGGAA--CCCAAGAUUAUCG
..(((((.(((((((..((...((((...((((((((((.(....))))).)-)))))...))))...))..))))))).))))).(((........))).--............. ( -36.00)
>DroYak_CAF1 5542 116 + 1
UGUAUCAGGUCACUUCCGGUUCUCAAUUCCACUGUCCAACCGGAAGUCGGUAACACUGAAAGUGACAACUAGAAGUGACGCGAUAUUCCUGUCAGUUUGAAGAUUGAAGAUUAUCG
........((((((((..(((.(((.((.((.(((...((((.....)))).))).)).)).))).)))..)))))))).(((((.((...((((((....)))))).)).))))) ( -34.70)
>consensus
UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCCACCGGAAGUCGGUGACAUUGAACGUGACAACUACAAGUGACGUGAUUAUUCAGUCUGAUUGAA__CCCAAGAUUAUCG
..(((((.(((((((..((...((((...((((((..(((((.....)))))))))))...))))...))..))))))).)))))............................... (-26.88 = -26.76 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:17 2006