Locus 4443

Sequence ID X_DroMel_CAF1
Location 11,764,343 – 11,764,456
Length 113
Max. P 0.907134
window7298

overview

Window 8

Location 11,764,343 – 11,764,456
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -30.38
Consensus MFE -20.96
Energy contribution -21.16
Covariance contribution 0.20
Combinations/Pair 1.41
Mean z-score -2.33
Structure conservation index 0.69
SVM decision value 1.05
SVM RNA-class probability 0.907134
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11764343 113 - 22224390
-------GCCAGCAUGGAGAUACCCAUUUCAAACAUUCUGCUGCUCUGCCUGAUCUUUCUGUUGAUCGGCGGAGUGGUGAUGAUCCUGCUGCAGUAUCUCAUCUUCAUCAAGUUCUCGAA
-------((.((((.(((((........))...((((..((..(((((((.((((........)))))))))))..)))))).)))))))))............................ ( -35.60)
>DroPse_CAF1 26629 113 - 1
-------CCCAACAUGGAGAUACCCAUUUCGAAUAUACUGCUGCUCUGCCUGAUCUUUUUGCUGAUUGGCGGGGUCAUCAUGAUACUGCUGCAGUAUCUGAUAUUCAUAAAAUUCUCCAA
-------.......((((((..........(((((.......((((((((.((((........))))))))))))..(((.(((((((...))))))))))))))).......)))))). ( -33.43)
>DroGri_CAF1 19837 113 - 1
-------CCCAAAAUGGAGAUACCCAUUUCCAAUGUACUGUUGCUCUGUUUGAUAUUCCUGCUUAUUGGCGGGGUAAUUAUGAUAUUGCUUCAGUAUUUGCUGUUUGUUAAGUUCUCAAA
-------..((((.(((((((....)))))))..((((((..((..((((((((..(((((((....)))))))..)))).))))..))..))))))......))))............. ( -27.80)
>DroMoj_CAF1 24118 113 - 1
-------CCCAACAUGGAGAUACCCAUUUCGAAUGUGCUGCUGCUCUGCCUAAUAUUCCUGCUAAUCGGCGGAGUUAUUAUGAUACUUCUGCAGUAUUUGCUCUUCAUCAAAUUCUCCAA
-------.......((((((..........((..(((((((.((((((((.................))))))))......((....)).)))))))....))..........)))))). ( -27.88)
>DroAna_CAF1 28545 120 - 1
CUAGCUAUCCAGCAUGGAGAUACCUAUUUCGAAUAUACUACUGCUGUGCUUGACCUUCCUGCUUAUCGGUGGGGUGCUAAUGAUUCUCCUGCAGUAUUUGCUUUUCAUCAAAUUCUCCAA
...(((....))).((((((..................((((((.(..(((.(((............))).)))..).............))))))((((........)))).)))))). ( -24.84)
>DroPer_CAF1 27017 113 - 1
-------CCCAACAUGGAGAUACCCAUUUCGAAUAUACUGCUGCUCUGUCUGAUAUUUUUGCUGAUUGGCGGGGUCAUCAUGAUACUGCUGCAGUAUCUGAUAUUCAUAAAAUUCUCCAA
-------.......((((((..........(((((((((((.((..((((((((..(((((((....)))))))..)))).))))..)).)))))).....))))).......)))))). ( -32.73)
>consensus
_______CCCAACAUGGAGAUACCCAUUUCGAAUAUACUGCUGCUCUGCCUGAUAUUCCUGCUGAUCGGCGGGGUCAUCAUGAUACUGCUGCAGUAUCUGAUAUUCAUCAAAUUCUCCAA
..............((((((..............(((((((.((....(.((((..(((((((....)))))))..)))).).....)).)))))))................)))))). (-20.96 = -21.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:08 2006