Locus 4440

Sequence ID X_DroMel_CAF1
Location 11,758,153 – 11,758,257
Length 104
Max. P 0.650930
window7292

overview

Window 2

Location 11,758,153 – 11,758,257
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.21
Mean single sequence MFE -41.87
Consensus MFE -32.94
Energy contribution -33.22
Covariance contribution 0.29
Combinations/Pair 1.43
Mean z-score -1.35
Structure conservation index 0.79
SVM decision value 0.24
SVM RNA-class probability 0.650930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11758153 104 + 22224390
CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUUCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA
(((((((((.(((....(....).(((((((((.....)((.....)))))))))).))).))))(((((......))))).....)))))..(((.....))) ( -43.30)
>DroGri_CAF1 13803 98 + 1
CCGGCGAUUGGCGAGAAUGUGAGAAUGCCUCCAAUCCUGGCUAUAUGUGGCGGUAUGCGUGGAUCUGCUU------CGGUCUCCAGUCCAACAUUACUGCCGGA
((((.((((((.(.(.((......)).)).)))))))))).......((((((((....((((.((((..------..)....)))))))....)))))))).. ( -31.70)
>DroSec_CAF1 11573 104 + 1
CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA
(((((((((.((((((.((........)))))..(((((((.....)))).)))...))).))))(((((......))))).....)))))..(((.....))) ( -44.00)
>DroSim_CAF1 6481 104 + 1
CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA
(((((((((.((((((.((........)))))..(((((((.....)))).)))...))).))))(((((......))))).....)))))..(((.....))) ( -44.00)
>DroEre_CAF1 40829 95 + 1
CCGGCGAUCGGGGGGCAGGUGACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUC---UG------UGGACUCCUCGCUGGGAUCCUCGCUGGA
(((((((((.(((....(....).(((((((((.....)((.....)))))))))).))).))))---.(------.(((..((.....))..))).)))))). ( -43.40)
>DroYak_CAF1 12724 104 + 1
CCGGCGAUCGGAGGACAGGUGACGAUGCCGCCGAUCCUCGCUAUGUGCGGCGGAAUGCUCGGAUCGUCUGAAAGGCCGGACUCCUCGCUGGGAUCCUCACUGGA
(((((((..((((..(.(((((((((.(((.((.(((((((.....)))).))).))..)))))))))......))))..)))))))))))..(((.....))) ( -44.80)
>consensus
CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA
(((((((((.(((....(....).(((((((((..............))))))))).))).))))(((((......))))).....)))))..(((.....))) (-32.94 = -33.22 +   0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:02 2006