| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,748,837 – 11,748,935 |
| Length | 98 |
| Max. P | 0.684771 |
| Location | 11,748,837 – 11,748,935 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.16 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -18.42 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11748837 98 + 22224390 CCAUCACACCAGCACACACACAAAACCAACACUGAGAGACCAGAAGGUAUCUAUA-GAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU .......(((((.............(((..((((((.(((..(((..((((....-))))..))).....))).)))))))))......)))))..... ( -21.41) >DroSec_CAF1 3710 94 + 1 CCAGCACAC----ACAUACACC-AACCAACACUGGGAGACCAGAAGGUAUCUGUAGGAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU ..(((....----...((((..-.(((....((((....))))..)))...)))).(((((.......))))))))(((((......)))))....... ( -22.20) >DroEre_CAF1 6184 81 + 1 CACA--------------CAC---ACCAACACUGAGAGACCAGAAGGUAUCUAUA-GAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU ....--------------...---.(((..((((((.(((..(((..((((....-))))..))).....))).)))))))))................ ( -19.00) >consensus CCAACACAC____ACA_ACAC__AACCAACACUGAGAGACCAGAAGGUAUCUAUA_GAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU .........................(((..((((((.(((..(((..((((.....))))..))).....))).)))))))))................ (-18.42 = -18.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:01 2006