Locus 4437

Sequence ID X_DroMel_CAF1
Location 11,727,996 – 11,728,086
Length 90
Max. P 0.535542
window7289

overview

Window 9

Location 11,727,996 – 11,728,086
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -26.90
Consensus MFE -22.56
Energy contribution -22.62
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.51
Structure conservation index 0.84
SVM decision value 0.00
SVM RNA-class probability 0.535542
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11727996 90 - 22224390
GGAACUAGCAACCGGAAGCCGGAAACGGGCCCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAUUAAU
(((((.((((...((...(((....)))..))........((((((((((......))))).))))).....))))..)))))....... ( -25.30)
>DroSec_CAF1 9462 90 - 1
GGAACCAGCAACCGGAAGCCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAUUAAU
(((((.((((...((...(((....)))..))........((((((((((......))))).))))).....))))..)))))....... ( -25.00)
>DroEre_CAF1 7021 90 - 1
GGAACCGGGAAGCGGAAACCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAAUAAU
(((((..(((.((((...(((....)))............((((((((((......))))).)))))....))))))))))))....... ( -28.80)
>DroYak_CAF1 9835 90 - 1
GGAACCGGCAACGGAAAACCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUUGUCGCACUGCUCCGUUCUCAAUAGU
((..(((....)))....(((....)))..)).......(((((.((...((.....))(((.....)))...)).)))))......... ( -28.50)
>consensus
GGAACCAGCAACCGGAAACCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAAUAAU
(((((.((((...((...(((....)))..))........((((((((((......))))).))))).....))))..)))))....... (-22.56 = -22.62 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:59 2006